BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56150.1
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495701 jgi|Araly1|495701|fgenesh2_kg.8__1517__AT5G56150.1 898 0.0
> Ahg495701 jgi|Araly1|495701|fgenesh2_kg.8__1517__AT5G56150.1
Length=725
Score = 898 bits (486), Expect = 0.0
Identities = 560/596 (94%), Gaps = 4/596 (1%)
Strand=Plus/Plus
Query 1 ATCTTCAAAACAACCCCTTGAGATTTCCGAAGATCATCAAATCCAAAACCCTAGAAACCG 60
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1 ATCTTCAAAACAACACCTTGAGATTTCCGAAG---ATCAAATCCAAAACCCTAGAATCCG 57
Query 61 AACAAAAGCTAGCAGAAGCTAGGACTATTCAATGGCGTCGAAAAGAATTAACAAAGAGCT 120
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 58 CACAAAAGCTAGCAGCAGCGAGGACTATTCAATGGCGTCGAAAAGAATTAACAAGGAGCT 117
Query 121 TAGGGACTTGCAAAGAGATCCTCCTGTGTCCTGCAGTGCAGGTCCTACGGGAGATGATAT 180
||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 118 TAGGGACCTGCAAAGAGATCCTCCTGTGTCATGCAGTGCCGGTCCTATGGGAGATGATAT 177
Query 181 GTTCCAATGGCAAGCAACTATCATGGGTCCAGCAGATAGCCCGTTTGCCGGAGGTGTGTT 240
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 GTTCCATTGGCAAGCAACTATCATGGGTCCAACAGATAGCCCGTTTGCCGGAGGTGTGTT 237
Query 241 TCTTGTTACCATTCACTTCCCACCAGATTACCCTTTCAAGCCACCAAAGGTTGCCTTCCG 300
||| ||||||||||||||||| || || ||||| ||||| || ||||||||| |||||||
Sbjct 238 TCTCGTTACCATTCACTTCCCTCCTGACTACCCATTCAAACCTCCAAAGGTTTCCTTCCG 297
Query 301 GACCAAGGTTTATCACCCAAACATCAACAGTAATGGAAGTATCTGTCTTGACATTCTGAA 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 298 CACCAAGGTTTATCACCCAAATATCAACAGTAATGGAAGTATCTGTCTTGACATTCTCAA 357
Query 361 AGAGCAGTGGAGCCCTGCACTTACCGTATCCAAGGTTCTTCTGTCGATATGCTCATTGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAGCAGTGGAGCCCTGCACTTACCGTATCCAAGGTTCTTCTGTCGATATGCTCATTGCT 417
Query 421 GACGGATCCAAACCCTGACGATCCTTTGGTTCCTGAAATAGCGCACATCTACAAGACAGA 480
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 GACGGATCCAAACCCTGATGATCCTTTGGTTCCTGAAATAGCTCACATCTACAAGACAGA 477
Query 481 CCGAGTCAAGTACGAGTCCACAGCTCAATCCTGGACTCAGAAGTATGCAATGGGATGATA 540
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 478 CCGAGTCAAGTACGAGTCTATGGCTCAATCCTGGACCCAGAAGTATGCAATGGGATGATA 537
Query 541 ACAAGCAATAATACCCACCACCAGTACATTGCGTATTAAACAGGAGAAATAAGAAA 596
|| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 538 ACTAGCAATAATACCCAC-ACCAGTACATTGCGCATTAAACATGAGAAATAAGAAA 592
Score = 156 bits (84), Expect = 3e-37
Identities = 123/139 (88%), Gaps = 13/139 (9%)
Strand=Plus/Plus
Query 626 TTTGGCTACTTTTGCTTATTAGttttttttttttAATTATATCTTGAAGCTGTGTGTT-- 683
||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||
Sbjct 593 TTTGGCTACTTTTGCCTATTAG--TTTTTTTTTT--TTATATCTTGAAGCCGTGTGTTGG 648
Query 684 G-G-GTGTGTACATGAGC--T-TTATGCCTTATTTGAAACATTGAGATCTTGCAAATGCT 738
| | |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 649 GTGTGTGTGTACATGAGCTTTATTATGCCTTATTTGAAACATTGAGATCTTGCAA-TGCT 707
Query 739 TTTAAGCCAATAATCCGCT 757
|| |||||||||||| |||
Sbjct 708 TT-AAGCCAATAATCTGCT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28058466912
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5