BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56160.1
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917308 jgi|Araly1|917308|Al_scaffold_0008_2059 2401 0.0
> Ahg917308 jgi|Araly1|917308|Al_scaffold_0008_2059
Length=1728
Score = 2401 bits (1300), Expect = 0.0
Identities = 1590/1726 (92%), Gaps = 35/1726 (2%)
Strand=Plus/Plus
Query 248 ATGTCAGGTCGAGAACAAACAGGAGAGAAACTATCAGATTCTGAGTACATAGAAGAAGAG 307
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGTCAGGTCGTGAACAAACAGGAGAGAAACTATCAGATTCTGAGTGCATAGAAGAAGAG 60
Query 308 CCACGGCGTTCTAGAATTGGGAATTTGAAGAAGAAGGCTTTTAGTTGTTCAACTAAACTT 367
||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 61 CCACGGCGTTCTAGAATCGGGAATTTGAAGAAGAAGGCTATTACTTGTTCAAGTAAACTT 120
Query 368 ACACATCCTTTGAAGATGAGAAAAGGCAAACGTAAAATCGATTTCCAGATTCCTTTGATT 427
|| ||||||||| | | ||||||||||||||||||||||| || ||||||| |||
Sbjct 121 ACTCATCCTTTG-A-A-GAGAAAAGGCAAACGTAAAATCG------AGCTTCCTTTTATT 171
Query 428 GAAGATGTTAGAGATGAGAAAGAGGAGAAGCTTGTTTCTAAATTGCGTCAACAACTTCTT 487
||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 172 GAAGATGTTAGGGATGAGAAAGATGAGAAGATTGTTTCTAAATTGCGTCAAGAACTTCTT 231
Query 488 CAGAAAGATTTGTTGCCTCCAGTACATGATGATTATCATATGTTGTTGAGGTTTCTGAAA 547
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 232 AAGAAAGATTTGTTGCCTCCAACGCATGATGATTATCATATGTTGTTGAGGTTTCTGAAA 291
Query 548 ACAATGGAATTCAAAATCGAGAAAACTGTCACGGCATGGGAGGAAATGCTTAAATGGAGG 607
|||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||
Sbjct 292 ACAATGGAATTCAAAATCGAGAAAACTGTCACTGCATGGGAAGATATGCTCAAATGGAGG 351
Query 608 AAAGAATTTGGAACCGATCGCATTATACAGGATTTCAATTTCAAAGAGTTGGATGAAGTG 667
|||||||||| ||| || ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 352 AAAGAATTTGCAACTGACCGCATTATACAGGATTTTAATTTCAAAGAGTTGGACCAAGTG 411
Query 668 ACAAGGCACTATCCTCAAGGGTATCATGGAGTTGATAAAGATGGGAGACCTATTTATATC 727
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 412 ACACGGCACTATCCTCAAGGGTATCATGGAGTTGATAAGGATGGGAGACCTATTTATATC 471
Query 728 GAGAGACTTGGAAAAGCTCATCCTGGTAAACTTATGGAGGTTACTACTATAGAGCGATAC 787
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 472 GAAAGACTTGGAAAAGCTCATCCTGGTAAGCTTATGGAGGTTACTACCATAGAGCGATAT 531
Query 788 TTGAAGTACCATGTTCAAGAATTCGAGAGGACACTTCAAGAGAAGCTACCTGCGTGTTCA 847
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 532 TTGAAGTACCATGTACAAGAATTTGAGAGGACACTTCAAGAGAAGCTCCCTGCGTGTTCA 591
Query 848 GTTGCAGCTAAGAGACGAGTTACTACAACTACTACAATACTAGATGTTGAAGGCCTGGGT 907
|||||||||||| |||||||||||||||| ||||| || ||||||||||||||| |||||
Sbjct 592 GTTGCAGCTAAGCGACGAGTTACTACAACAACTACGATTCTAGATGTTGAAGGCTTGGGT 651
Query 908 ATGAAGAACTTTACTCCTACCGCTGCTAATCTCCTGGCCACCATTGCTAAAGTTGATTGC 967
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 652 ATGAAGAACTTTACTCCTACAGCTGCTAATCTCCTGGCCACCATTGCTAAAGTAGATTGC 711
Query 968 AATTATTACCCTGAGACTTTGCACCGAATGTTCATTGTCAATGCAGGGATTGGATTCAGG 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AATTATTACCCTGAGACTTTGCACCGAATGTTCATTGTCAATGCAGGGATTGGATTCAGG 771
Query 1028 AGTTTTCTTTGGCCTGCCGCACAGAAGCTTCTTGATCCGATGACTATTGCAAAGATACAA 1087
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 AATTTTCTTTGGCCTGCCGCACAGAAGCTTGTTGATCCGATGACTATTGCAAAGATACAA 831
Query 1088 GTTTTGGAGCCAAGGTCCTTGTCAAAGTTACTTGAAGCAATTGATTCCAGTCAACTTCCA 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTTTTGGAGCCAAGGTCCTTGTCAAAGTTACTTGAAGCAATTGATTCCAGTCAACTTCCA 891
Query 1148 GAATTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCTAACAAA 1207
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 892 GAGTTCTTGGGAGGCTTATGCAAATGTCCTAACGAGGGAGGGTGCTTGAGGTCAAATAAA 951
Query 1208 GGACCCTGGAATGATCCTGAAATAGTTGAGCTCGTTCATCACATGGAAGTAAATAATGTA 1267
|||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||
Sbjct 952 GGACCCTGGAATGATCCTGAAATA------CTCATTCATCACATGGAAGTTAATCCTGTA 1005
Query 1268 CCGCAAA-CAACAACAGCTCCTCTTCATGTAAGAGATTATGATTCTACCACTTGCACGAT 1326
||||||| || ||||||||||||||| | |||| |||||||||||| |||||||||||||
Sbjct 1006 CCGCAAATCA-CAACAGCTCCTCTTCGTATAAGTGATTATGATTCTTCCACTTGCACGAT 1064
Query 1327 CTCGCCTAAAGAAA-------C-----TTTGAAAGAAGAGCCAGAACCTGAAGAATATTA 1374
| |||||||||||| | ||| ||||||||||||||| |||||||||||||
Sbjct 1065 CCCGCCTAAAGAAAGGTATAACAAAACTTTTAAAGAAGAGCCAGAATCTGAAGAATATTA 1124
Query 1375 CTCTTCCACTGGGTCCAGATCTTCAATGCACACTTGTATAGTTCCTCCACTCTCTGATAA 1434
||||||||||||||| |||||||||||| ||| |||| |||||||| |||||||||||||
Sbjct 1125 CTCTTCCACTGGGTCAAGATCTTCAATGTACAATTGTTTAGTTCCTTCACTCTCTGATAA 1184
Query 1435 GGCTAGTACATCAGACGGTGATAAATTCATTACTACCGTGGAATCTATAGAATCGGCTCA 1494
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1185 GGCTAGTACATCAGACGGTGATAAAATCATTACTACCGTGGAATCTATAGAACCGGCTCA 1244
Query 1495 ATCCCA-ATTACTTGACGCGGATACTGAAAACACTTTCGCAAATACATCTGTAAGAGAAG 1553
|||||| || |||| || |||| || |||||| |||| ||||||||| | |||||||||
Sbjct 1245 ATCCCATAT-ACTTAACACGGACACCGAAAACTCTTTTGCAAATACAACCATAAGAGAAG 1303
Query 1554 GTGGTCAGATTTTACGGTTTGGTGCTCTTAGAGAGAAAATCAACAGCGAGAACATCTTTC 1613
|||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1304 GTGGTCAGATGTTACGGTTTGGTGCACTTAGAGAGAAAATCAACGGCGAGAACATCTTTC 1363
Query 1614 ACTTGGTGAAAATACTACTAGTTTTTCCACTGAAGCTATTTGTTCT-CTTTGGTTTCCTA 1672
|||||||||||| |||||||| |||||||||||||||||||| || | |||||||||||
Sbjct 1364 ACTTGGTGAAAACACTACTAGCCTTTCCACTGAAGCTATTTGT-CTTCGTTGGTTTCCTA 1422
Query 1673 TTACCTGGATACTGGCAAAGACAGAACACA-GTCGTTGTCCCAGATTCGTCGACAAACAA 1731
|| ||||||||||||||||||||||||| | |||||||||||||| || || | ||||||
Sbjct 1423 TTGCCTGGATACTGGCAAAGACAGAACA-ATGTCGTTGTCCCAGAATCATCAATAAACAA 1481
Query 1732 CAAGGTTCTTGAGTGTTTCGATCGTCTTAAGAAGATGGAGAAAGAATTCACAGAGATCAG 1791
| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1482 CCAGGTTCTCGAGTGTTTAGATCGTCTTAAGAAGATGGAGAAAGAATTCACAGAGATTAG 1541
Query 1792 TAGAAAACAAGTAAAAATCCCAGAAGCAAATGAGAAGCTATTAGCAGAATCTCTGGAGAG 1851
|||||||| |||||||||||||||||||||||||||||| ||| | |||||||| |||||
Sbjct 1542 TAGAAAACCAGTAAAAATCCCAGAAGCAAATGAGAAGCTCTTAACGGAATCTCTCGAGAG 1601
Query 1852 GATCAAGTCTCTAGAACTCGATCTCGACAAAACGAAATCAGTATTACATATAACATTAAC 1911
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1602 GATCAAGTCTCTAGAACTCGATCTCGACAAAACCAAATCAGTATTACATATAACATTAAC 1661
Query 1912 AAAACAACTTCAGATTACAGAACAGCTTGAATCTCAAGACGAAGAA 1957
||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1662 AAAACAACTTCAGATCACAGAACAGCTTGAATCTCATTACCAAGAA 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82465380425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5