BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56170.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495704 jgi|Araly1|495704|fgenesh2_kg.8__1520__AT5G56170.1 1157 0.0
> Ahg495704 jgi|Araly1|495704|fgenesh2_kg.8__1520__AT5G56170.1
Length=786
Score = 1157 bits (626), Expect = 0.0
Identities = 739/792 (93%), Gaps = 14/792 (2%)
Strand=Plus/Plus
Query 58 TCTCTTTCATCTTCGTGGTTTGCCATAGCTCTTCTTGAATCAAGGTCGTCTTCTTGAAAT 117
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCTCTTTCATCTTCGTGGTTTGCCATAGCTCTTCTTGAATCAAAGTCGTCTTCTTGAAAT 60
Query 118 CAGATCTCTTCGTGACTTCTCCTGTAACCAACAAAGAACCATGGAGCTCctctctagagc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGATCTCTTCGTGACTTCTCCTGTAACCAACAAAGAACCATGGAGCTCCTCTCTAGAGC 120
Query 178 tcttttcttctttcttctactctcagtt-c--tttcttctttctcttcttcAAGTTTCAT 234
||||||||| ||||||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 121 TCTTTTCTTTTTTCTTCTACTCTCAACTACACTTTCTTCTTTCTCATCTTCAAGTTTCAT 180
Query 235 TTCAGATGGGGTCTTCGAATCTCAGAGTTTGGTTCTTGGCAGAAACTTGCTTCAGACCAA 294
||||||||| || ||||||||||||| ||||||| |||| |||||| |||||||||||||
Sbjct 181 TTCAGATGGTGTGTTCGAATCTCAGACTTTGGTTATTGGAAGAAACCTGCTTCAGACCAA 240
Query 295 GAAAACATGTCCTGTGAACTTTGAGTTTATGAACTACACGATCATAACCAGCAAATGCAA 354
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 GAAAACATGTCCTGTGAACTTTGAGTTTATGAACTACACGGTCATAACCAGCAAATGCAA 300
Query 355 AGGTCCCAAATACCCACCAAAAGAATGTTGTGGCGCCTTCAAGGACTTTGCGTGTCCTTA 414
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 301 AGGTCCCAAATACCCACCAAAGGAATGTTGCGGCGCCTTCAAGGACTTTGCGTGTCCTTA 360
Query 415 CACTGACCAGCTCAACGACCTGAGCTCGGATTGTGCAACCACTATGTTCAGTTACATCAA 474
||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct 361 CACTGACCAGCTCAACGACCTCAGCTCAGATTGTGCAACCATTATGTTCAGTTACATCAA 420
Query 475 TCTCTATGGAAAATACCCGCCTGGACTTTTCGCTAACCAGTGCAAAGAAGGTAAAGAAGG 534
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCTATGGTAAATACCCGCCTGGAATTTTCGCTAACCAGTGCAAAGAAGGTAAAGAAGG 480
Query 535 TCTCGAATGCCCTGCCGGATCCCAGTTGCCTC-CAGAGA-CATCAGCAGAGGTAAACGCA 592
||||||||| |||||||||||||||||||| | || | | || || |||| |||||||||
Sbjct 481 TCTCGAATGTCCTGCCGGATCCCAGTTGCC-CGCACA-ATCAACATCAGACGTAAACGCA 538
Query 593 GCAACTACCTCGTCGTCCCGTCTTTGGCTGACCGTTTCCGCGGCTCTTTTGGTTTTTGTT 652
||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 539 GCAACTACCTCTTCGTCCCGTCTTTGGCTGACCATTTCCGCAGCTCTATTGGTTTTTGTT 598
Query 653 AAGTTGTTCTGAGGCTGATAAATCCGAATTTCTGCAATGAACTTATTACAACAACCTGAG 712
|||||||||||||||||| ||| ||| ||||||||||||||||| | | | |||||||||
Sbjct 599 AAGTTGTTCTGAGGCTGAGAAAGCCGGATTTCTGCAATGAACTTGT-A-A-CAACCTGAG 655
Query 713 GAAGAGGATGTATGTATATCCACGATTTGTTTTACTGTT-GTACTGTCTCATTCTTTTGT 771
|||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 656 GAAGAGAATGTATGTATATCCACGATTTGTTTTACTGTTTGAACTATCTCATTCTTTTGT 715
Query 772 TACTAGGGAGTTCAAAAAA-TTCTAAATGATAATTTGTAATGGCCTTTGTGTGTCT-ACT 829
|| |||||||||||||||| |||||||||||||||||||||||| |||||| || | | |
Sbjct 716 TATTAGGGAGTTCAAAAAAATTCTAAATGATAATTTGTAATGGCTTTTGTGCGTATTA-T 774
Query 830 TGTCTCTTCTTA 841
||||||||||||
Sbjct 775 TGTCTCTTCTTA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5