BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56190.2
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917311 jgi|Araly1|917311|Al_scaffold_0008_2062 2152 0.0
> Ahg917311 jgi|Araly1|917311|Al_scaffold_0008_2062
Length=1347
Score = 2152 bits (1165), Expect = 0.0
Identities = 1288/1348 (96%), Gaps = 5/1348 (0%)
Strand=Plus/Plus
Query 166 ATGTCTGATTACAATGGTGATGATCTTGAAGATGAATATATGGCTGATGAGTATGACATG 225
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTGTTTAAAATGGTGATGATCTTGAAGATGAATATATGGCTGATGAGTATGACATG 60
Query 226 GATGATCTCGAGGATGATATGAATGCCGCGTTTGATGGAAGAGATATCGATGCTTCT--- 282
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 61 GATGATCTCGAGGATGATATGAATGCCGAGTTTGATGGAAGAGAGATCGATGCTTCTTCT 120
Query 283 GATTCCGAAGTCGAAGATTTCGATCAATTGAACAAGGCTGCAGATACTTCTGCTGCTCAA 342
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 GATTCTGAAGTCGAAGATTTCGACCAATTGAACAAGGCTGCAGATACTTCTGCTGCACAA 180
Query 343 GCACGGAATGGGAAGGATATTCAGGGTATACCGTGGGATAGTCTTA-CTCTTACTAGAAA 401
||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 181 GCACGAAATGGGAAGGATATTCAGGGTATACCGTGGGATAGACTTAACA-TTACTAGAAA 239
Query 402 AGATTACAGAAAAACTAGGCTAGAACAATATAAAAACTATGAAAATATACCCAATTCTGG 461
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 240 AGAGTACAGAAAAACTAGGCTAGAACAGTATAAAAACTATGAAAATATACCCAATTCGGG 299
Query 462 TGATGAATCTGCCAAGAAATGCATGAATACTGAGAAAGGCAGCTCTTTCTATGAGTTCAG 521
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAGGAATCTGCCAAGAAATGTATGAATACTGAGAAAGGCAGCTCTTTCTATGAGTTCAG 359
Query 522 AAGGAATTCTAGATCCGTGAGATCAACGATTCTCCATTTTCAGTTGAGGAATTTGGTCTG 581
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GAGGAATTCTAGATCAGTGAGATCAACAATTCTCCATTTTCAGTTGAGGAATTTGGTCTG 419
Query 582 GGCTACCTCAAAACACGATGTTTATTTATTGTCCAACTACTCCATCAGCCACTGGTCTTC 641
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GGCTACCTCAAAACATGATGTTTATCTATTGTCCAACTACTCCATCAGCCACTGGTCTTC 479
Query 642 TTTGACAGGTTGTAGGAGTGAAATTCTTAACGTTAAAGGTCATGTGGCTCCGTCTGAGAA 701
||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTAACAGCTTGTAGGAATGAAATTCTTAACGTTAAAGGTCATGTGGCTCCGTCTGAGAA 539
Query 702 ACATCCCGAGAGTTTGTTGGAAGGATTTACAGAGACTCAAGTTAGCACTCTTGCAGTAAA 761
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACATCCTGAGAGTCTGTTGGAAGGATTTACAGAGACTCAAGTTAGCACTCTTGCAGTAAA 599
Query 762 AGAAAGGCTACTAGTTGCTGGTGGATTCCAAGGAGAACTCATTTGCAAGCATCTCGATAG 821
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 600 AGAAAGGCTGCTAGTTGCTGGTGGATTTCAAGGAGAAATCATTTGCAAGCATCTCGATAG 659
Query 822 ACCTGGTGTGAGCTTCTGCTCACGCACAACTTACACCGAAAACGCTATCACCAATGCAGT 881
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 660 ACCTGGTGTGAGCTTCTGCTCACGCACAACTTATACCGAAAACGCTATCACCAATGCTGT 719
Query 882 AGATATATATAGAAACTCCAGCGGCGCACTGCATTTCATGGCCTCAAATAATGACTGTGG 941
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 AGATATATATAGAAACTCCAGCGGCGCACTTCATTTCATGGCCTCAAATAATGACTGTGG 779
Query 942 AGTCAGAGACTTTGACATGGAGAGATATAAGCTTGTCCAACTCTTCCGTTATCTATGGCC 1001
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 780 AGTCAGAGACTTTGACATGGAGAGATATCAGCTTGTCCAACTCTTCCATTATCTATGGCC 839
Query 1002 CGTCAATCATAGTTCCCTAAGTCCTGATGGAAAACTAGTAGCAGTCGTTGGAGATGACCC 1061
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 840 CGTCAATCATAGCTCCCTAAGTCCTGACGGGAAACTAGTAGCAGTCGTTGGAGATGACCC 899
Query 1062 AGATGGTCTACTGGTAGACACAAGTAACGGACAGACGATCGGGACGCTAAAAGGTCACTT 1121
||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||
Sbjct 900 AGATGGTCTACTGGTAGACGCAAGCAACGGACGGACAATCGGGACGCTAAAAGGTCACTT 959
Query 1122 AGATTATTCATTTGCATCAGCTTGGCATCCAAACGGTGTAACATTTGCCACAGGAAACCA 1181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 AGATTATTCATTTGCATCAGCTTGGCATCCAAATGGTGTAACATTTGCCACAGGAAACCA 1019
Query 1182 AGACAAGACCTGTCGTATTTGGGACACAAGGAAACTCTCGGAATCAGTCGCTGTCCTAAA 1241
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 AGACAAGACCTGTCGTATTTGGGACACAAGGAAACTCTCAGAATCAGTCGCTGTCCTAAA 1079
Query 1242 AGGTAACCTTGGAGCCGTACGGTCCATTAGGTTCACATCTGACGGACGGTACGTTGCCAT 1301
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 AGGTAACCTCGGAGCCGTACGATCCATTAGGTTCACATCTGACGGACGGTACGTTGCAAT 1139
Query 1302 GGCCGAGCCAGCAGATTTCGTTCATATCTATGACACAAAATCAGGATACAAAAAGGAGCA 1361
|||||||||||||||||| || ||||||||||||| |||| |||| ||||||||||||||
Sbjct 1140 GGCCGAGCCAGCAGATTTTGTCCATATCTATGACATAAAAGCAGGCTACAAAAAGGAGCA 1199
Query 1362 AGAGATTGATTTCTTTGGAGAGATTTCTGGGATATCGTTTAGCCCAGATACTGAATCTCT 1421
|||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 1200 AGAGATTGATTTCTTTGGAGAGATATCTGGGATTTCGTTTAGTCCAGATACAGAATCTCT 1259
Query 1422 CTTCATCGGTGTTTGGGACAGGACTTATGGAAGTCTCTTGGAGTATGGTCGAACCAGAGA 1481
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTTCATCGGTGTTTGGGACCGGACTTATGGAAGTCTCTTGGAGTATGGTCGAACCAGAGA 1319
Query 1482 CTACACTTATCTCGATTCATTACTTTGA 1509
||||||||||||||||||||||||||||
Sbjct 1320 CTACACTTATCTCGATTCATTACTTTGA 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5