BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56200.1 Length=1482 Score E Sequences producing significant alignments: (Bits) Value Ahg495709 jgi|Araly1|495709|fgenesh2_kg.8__1525__AT5G56200.1 1849 0.0 > Ahg495709 jgi|Araly1|495709|fgenesh2_kg.8__1525__AT5G56200.1 Length=1403 Score = 1849 bits (1001), Expect = 0.0 Identities = 1234/1338 (92%), Gaps = 50/1338 (4%) Strand=Plus/Plus Query 154 GAAGAGGAAAATGATCATGAAGCTAAGAGTATGGATCTAGAGCAAGGAGATGTGgaag-a 212 ||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||| | Sbjct 97 GAAGAAGAAGATGATCATGGAGCTAAGAGTATGGATCTAGAGGAAGGAGATGTGGAAGAA 156 Query 213 --agaagaag--g-agaagagaaAAAACATATATGTTGTGAATGTGGTAAAAGGTTTGTG 267 |||||||| | ||||||||| || ||||||||| ||||||||||||||||||||||| Sbjct 157 GTAGAAGAAGAAGAAGAAGAGAAGAAGCATATATGTGGTGAATGTGGTAAAAGGTTTGTG 216 Query 268 TCAGGTAAAGCTTTAGGAGGTCATAAACGGATTCATGTGCTCGAAACTCGTAAATTCTCA 327 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 217 TCAGGTAAAGCTTTAGGAGGCCATAAACGGATTCATGCGCTCGAAACTCGTAAATTCTCA 276 Query 328 ATGATGAGACCAAAGATGGTGTCTGGTATGGTTGGTAGATCTGAAAGAGGTGACTTAGAA 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 ATGATGAGACCAAAGATGGTGTCTGGTATGGTTGGTAGATCTGAAAGAGGTGACTTAGAA 336 Query 388 GTGGCTTGTTGTGTTTGTTACAAGAAGTTTACATCAATGAAGGCTTTATATGGACACATG 447 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 337 GTGGCTTGTTGTGTTTGTTACAAGAAGTTTACATCAATGAAGGCTTTGTATGGACACATG 396 Query 448 AGGTTTCATCCAGACAGAGGTTGGAAAGGTGTTTTGCCTCCTCCTCCTCTTCTTCCTCAT 507 ||||||||||||||||||||||||||||| |||||| |||||| | | |||||||||| Sbjct 397 AGGTTTCATCCAGACAGAGGTTGGAAAGGAGTTTTG---CCTCCT-C-C-TCTTCCTCAT 450 Query 508 CCACTTGGTAATTCATCGTCTTCTACA----C---T--tgatcatgatgatgagtttata 558 ||||| ||||||||||||||||||||| | | |||||||||||||||||||||| Sbjct 451 CCACTCGGTAATTCATCGTCTTCTACACTCTCTATTGATGATCATGATGATGAGTTTATA 510 Query 559 agctcagattatgatgatgatgatgattttgatgatgatgatgatgatgatgatgatgaG 618 ||||| | ||| | ||||||| ||||||| | ||||||||||||||||||| Sbjct 511 AGCTC-G-----GAT--T-ATGATGA---TGATGAT--T-TTGATGATGATGATGATGAG 555 Query 619 AACTCGGAGTTATGGGACAGTAATTTGGAATTGGAAAACGTTGTTGAATCGATTAAAGGA 678 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 556 AACTCGGAGTTATGGGACAGTAATTTGGAATTGGAAAACGTTGTTGAACCGATTAAAGGA 615 Query 679 TGGTCAACAAAAGGGAAGAGAGGAAGGAGAGGTGATTTGAAGTTTGATGAAGCAGATTTG 738 |||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||| Sbjct 616 TGGTCAACAAAAGGGAAGAGAGGAAGTAGAAGTGCTTTGAAGTTTGATGAATTGGATTTG 675 Query 739 AAGGATCCACCTTTAGAAGATGTGAAGGATATTGATGATGCTAATGGTCTATTGTTCTTA 798 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 AAGGATCCATCACCGGAAGATGTGAAGGATATTGATGATGCTAATGGTCTATTGTTCTTA 735 Query 799 GCTACTACTGCAGAAGCAGCTGCTAATCTTAATGTTGCTGAGACTTCTGCTTCGCGTTCC 858 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| Sbjct 736 GCTACTACTGCAGAAGCAGCTGCTAATCTTAATGTTGCGGAGACTTCTGTTTCGCATTCC 795 Query 859 GTTGAAGAGAAATATCTGGAAATGGTCaagaagaggaagaagaagcagaagagattgtct 918 ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 796 GTTGAGGAAAAATATCTGGAAATGGTCAAGAAGAGGAAGAAGAAGCAGAAAAGATTGTCT 855 Query 919 gagatggagaaagagTCATCAACATCTACTCATCATGATCATCAGCTTGATCAGGTTGTT 978 |||||||| ||| || ||||||||||| | ||| ||||||||||||||||| | ||| Sbjct 856 GAGATGGA-AAA-AG-AATCAACATCTA--C-TCAGGATCATCAGCTTGATCA-G--GTT 906 Query 979 GTTGTTGCAGCTGAGGAAGGTGGTGGTGCCGGTGCACGTGAGAA---GCACGTGTGTGTG 1035 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 907 GTTGTTGCAGCTGAGGAAGGTGGTGGTGCCGGTGCACGTGAGAATTCTCACGTGTGTGTG 966 Query 1036 ACTTGCAACAAGTCGTTTAGTTCTTATCAAGCTTTAGGAGGTCATAGAGCAAGTCACAAC 1095 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 ACTTGCAACAAGTCGTTTAGTTCTTATCAAGCTTTAGGAGGTCATAGAGCAAGTCACAAC 1026 Query 1096 AAGGTCAAGATATTGGAGAATCATCAAGCTAGGGCAAACGCTGAAGCTTCATTACTTGGA 1155 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1027 AAGGTCAAGATATTGGAGAATCATCAAGCCAGGGCAAACGCTGAAGCTTCATTACTTGGA 1086 Query 1156 ACTGAAGCAATAATAACCGGTTTAGCTAGTGCTCAAGGAACAAACACATCTTTAAGCAGT 1215 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1087 ACTGAAGCAATAACAACCGGTTTAGCTAGTGCTCAAGGATCAAACACATCTTTAAGCAGT 1146 Query 1216 AGTCATAATGGAGATCATGTTTGTAATATATGTCACAAAAGCTTCTCAACAGGTCAAGCT 1275 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1147 AGTCATAATGGAGATCATGTTTGTAATATATGTCATAAAAGCTTCTCAACAGGTCAAGCT 1206 Query 1276 CTTGGTGGTCACAAGAGATGTCATTGGACTGCACCAGTTTCTACTGTGGCTCCAACCACG 1335 ||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||||| || Sbjct 1207 CTTGGAGGTCACAAGAGATGTCATTGGACTGGACCAGTTTCTACTGAGGCTGCAACCGCG 1266 Query 1336 GTTCCAACCGCTGCTCCAACCGTTCCAGCAACTGCGTCTTCTAGTCAAGTAACAGAGACA 1395 | ||||||| |||||||||| | ||| ||| || ||||||||||| |||||||||||| Sbjct 1267 GCTCCAACCTCTGCTCCAACTGCTCCTGCAGGAGCCTCTTCTAGTCAGGTAACAGAGACA 1326 Query 1396 GTACAAGAGGTGAAGAAATTGAAGAGAAGAGTTTT-GGAGTTTGACTTGAATGAGTTGCC 1454 || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 1327 GTGCAAGAGGTGAAGAAATTGAAGAGAA-AGTTTTTGGAGTTTGACTTGAATGAGTTGCC 1385 Query 1455 ACCTAACGAAGAAGAAGA 1472 |||||||||||||||||| Sbjct 1386 ACCTAACGAAGAAGAAGA 1403 Score = 154 bits (83), Expect = 2e-36 Identities = 100/108 (93%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 1 ATGGACCAATTACGAGGTTACAAAACCAACTGTGGATTCTCACTTGGGAAACCGAGATTC 60 ||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAACACTTGCGAGGTTACAAAACAAACTGTGGATTCTCACTTGGGAAACCGAGATTC 60 Query 61 GGATCTATTAAGGTTAAAATCCCAAGGATCAAACCTGA-GATAGAAGA 107 |||||||| ||||||||||||||||||||| ||||||| || |||||| Sbjct 61 GGATCTATGAAGGTTAAAATCCCAAGGATCCAACCTGAAGA-AGAAGA 107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55459396720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5