BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56200.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495709 jgi|Araly1|495709|fgenesh2_kg.8__1525__AT5G56200.1 1849 0.0
> Ahg495709 jgi|Araly1|495709|fgenesh2_kg.8__1525__AT5G56200.1
Length=1403
Score = 1849 bits (1001), Expect = 0.0
Identities = 1234/1338 (92%), Gaps = 50/1338 (4%)
Strand=Plus/Plus
Query 154 GAAGAGGAAAATGATCATGAAGCTAAGAGTATGGATCTAGAGCAAGGAGATGTGgaag-a 212
||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 97 GAAGAAGAAGATGATCATGGAGCTAAGAGTATGGATCTAGAGGAAGGAGATGTGGAAGAA 156
Query 213 --agaagaag--g-agaagagaaAAAACATATATGTTGTGAATGTGGTAAAAGGTTTGTG 267
|||||||| | ||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 157 GTAGAAGAAGAAGAAGAAGAGAAGAAGCATATATGTGGTGAATGTGGTAAAAGGTTTGTG 216
Query 268 TCAGGTAAAGCTTTAGGAGGTCATAAACGGATTCATGTGCTCGAAACTCGTAAATTCTCA 327
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 217 TCAGGTAAAGCTTTAGGAGGCCATAAACGGATTCATGCGCTCGAAACTCGTAAATTCTCA 276
Query 328 ATGATGAGACCAAAGATGGTGTCTGGTATGGTTGGTAGATCTGAAAGAGGTGACTTAGAA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 ATGATGAGACCAAAGATGGTGTCTGGTATGGTTGGTAGATCTGAAAGAGGTGACTTAGAA 336
Query 388 GTGGCTTGTTGTGTTTGTTACAAGAAGTTTACATCAATGAAGGCTTTATATGGACACATG 447
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 337 GTGGCTTGTTGTGTTTGTTACAAGAAGTTTACATCAATGAAGGCTTTGTATGGACACATG 396
Query 448 AGGTTTCATCCAGACAGAGGTTGGAAAGGTGTTTTGCCTCCTCCTCCTCTTCTTCCTCAT 507
||||||||||||||||||||||||||||| |||||| |||||| | | ||||||||||
Sbjct 397 AGGTTTCATCCAGACAGAGGTTGGAAAGGAGTTTTG---CCTCCT-C-C-TCTTCCTCAT 450
Query 508 CCACTTGGTAATTCATCGTCTTCTACA----C---T--tgatcatgatgatgagtttata 558
||||| ||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 451 CCACTCGGTAATTCATCGTCTTCTACACTCTCTATTGATGATCATGATGATGAGTTTATA 510
Query 559 agctcagattatgatgatgatgatgattttgatgatgatgatgatgatgatgatgatgaG 618
||||| | ||| | ||||||| ||||||| | |||||||||||||||||||
Sbjct 511 AGCTC-G-----GAT--T-ATGATGA---TGATGAT--T-TTGATGATGATGATGATGAG 555
Query 619 AACTCGGAGTTATGGGACAGTAATTTGGAATTGGAAAACGTTGTTGAATCGATTAAAGGA 678
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 556 AACTCGGAGTTATGGGACAGTAATTTGGAATTGGAAAACGTTGTTGAACCGATTAAAGGA 615
Query 679 TGGTCAACAAAAGGGAAGAGAGGAAGGAGAGGTGATTTGAAGTTTGATGAAGCAGATTTG 738
|||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||
Sbjct 616 TGGTCAACAAAAGGGAAGAGAGGAAGTAGAAGTGCTTTGAAGTTTGATGAATTGGATTTG 675
Query 739 AAGGATCCACCTTTAGAAGATGTGAAGGATATTGATGATGCTAATGGTCTATTGTTCTTA 798
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 AAGGATCCATCACCGGAAGATGTGAAGGATATTGATGATGCTAATGGTCTATTGTTCTTA 735
Query 799 GCTACTACTGCAGAAGCAGCTGCTAATCTTAATGTTGCTGAGACTTCTGCTTCGCGTTCC 858
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 736 GCTACTACTGCAGAAGCAGCTGCTAATCTTAATGTTGCGGAGACTTCTGTTTCGCATTCC 795
Query 859 GTTGAAGAGAAATATCTGGAAATGGTCaagaagaggaagaagaagcagaagagattgtct 918
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 796 GTTGAGGAAAAATATCTGGAAATGGTCAAGAAGAGGAAGAAGAAGCAGAAAAGATTGTCT 855
Query 919 gagatggagaaagagTCATCAACATCTACTCATCATGATCATCAGCTTGATCAGGTTGTT 978
|||||||| ||| || ||||||||||| | ||| ||||||||||||||||| | |||
Sbjct 856 GAGATGGA-AAA-AG-AATCAACATCTA--C-TCAGGATCATCAGCTTGATCA-G--GTT 906
Query 979 GTTGTTGCAGCTGAGGAAGGTGGTGGTGCCGGTGCACGTGAGAA---GCACGTGTGTGTG 1035
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 907 GTTGTTGCAGCTGAGGAAGGTGGTGGTGCCGGTGCACGTGAGAATTCTCACGTGTGTGTG 966
Query 1036 ACTTGCAACAAGTCGTTTAGTTCTTATCAAGCTTTAGGAGGTCATAGAGCAAGTCACAAC 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 ACTTGCAACAAGTCGTTTAGTTCTTATCAAGCTTTAGGAGGTCATAGAGCAAGTCACAAC 1026
Query 1096 AAGGTCAAGATATTGGAGAATCATCAAGCTAGGGCAAACGCTGAAGCTTCATTACTTGGA 1155
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1027 AAGGTCAAGATATTGGAGAATCATCAAGCCAGGGCAAACGCTGAAGCTTCATTACTTGGA 1086
Query 1156 ACTGAAGCAATAATAACCGGTTTAGCTAGTGCTCAAGGAACAAACACATCTTTAAGCAGT 1215
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1087 ACTGAAGCAATAACAACCGGTTTAGCTAGTGCTCAAGGATCAAACACATCTTTAAGCAGT 1146
Query 1216 AGTCATAATGGAGATCATGTTTGTAATATATGTCACAAAAGCTTCTCAACAGGTCAAGCT 1275
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1147 AGTCATAATGGAGATCATGTTTGTAATATATGTCATAAAAGCTTCTCAACAGGTCAAGCT 1206
Query 1276 CTTGGTGGTCACAAGAGATGTCATTGGACTGCACCAGTTTCTACTGTGGCTCCAACCACG 1335
||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||
Sbjct 1207 CTTGGAGGTCACAAGAGATGTCATTGGACTGGACCAGTTTCTACTGAGGCTGCAACCGCG 1266
Query 1336 GTTCCAACCGCTGCTCCAACCGTTCCAGCAACTGCGTCTTCTAGTCAAGTAACAGAGACA 1395
| ||||||| |||||||||| | ||| ||| || ||||||||||| ||||||||||||
Sbjct 1267 GCTCCAACCTCTGCTCCAACTGCTCCTGCAGGAGCCTCTTCTAGTCAGGTAACAGAGACA 1326
Query 1396 GTACAAGAGGTGAAGAAATTGAAGAGAAGAGTTTT-GGAGTTTGACTTGAATGAGTTGCC 1454
|| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1327 GTGCAAGAGGTGAAGAAATTGAAGAGAA-AGTTTTTGGAGTTTGACTTGAATGAGTTGCC 1385
Query 1455 ACCTAACGAAGAAGAAGA 1472
||||||||||||||||||
Sbjct 1386 ACCTAACGAAGAAGAAGA 1403
Score = 154 bits (83), Expect = 2e-36
Identities = 100/108 (93%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 1 ATGGACCAATTACGAGGTTACAAAACCAACTGTGGATTCTCACTTGGGAAACCGAGATTC 60
||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAACACTTGCGAGGTTACAAAACAAACTGTGGATTCTCACTTGGGAAACCGAGATTC 60
Query 61 GGATCTATTAAGGTTAAAATCCCAAGGATCAAACCTGA-GATAGAAGA 107
|||||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 61 GGATCTATGAAGGTTAAAATCCCAAGGATCCAACCTGAAGA-AGAAGA 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5