BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56210.1
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950278 jgi|Araly1|950278|scaffold_802165.1 1727 0.0
> Ahg950278 jgi|Araly1|950278|scaffold_802165.1
Length=1660
Score = 1727 bits (935), Expect = 0.0
Identities = 1088/1160 (94%), Gaps = 17/1160 (1%)
Strand=Plus/Plus
Query 768 GAGTAGTACAATGAGTCATTCTTGGGACAAACATAGAGGAAAGGT-CTCGGGTGGGAAGA 826
||| ||||||||| ||||||||||||||||||||||||| || || |||||||||||||
Sbjct 510 GAG-AGTACAATGGGTCATTCTTGGGACAAACATAGAGGGAA-GTATTCGGGTGGGAAGA 567
Query 827 GTGTGATTAGTTCGGGGGATAGTAGTCAACAAAGGAAGAGTAGTGTAGAGAAGAGTAATA 886
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 568 GTGTGATTAGTTCGGGTGATAGTAGTCAACAAAGGAAGAGTAATGTAGAGAAGAGTAAGA 627
Query 887 AACTTAGAGGAGAAAGGATCAAAATTGAGAAGGAAAACTCTCATTCCAGCATGGAATCTG 946
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 628 AACTTAGAGGAGAAAGGATCAAAATTGAGAAGGAAAACTCTCATTCCAGTATGGAATCTG 687
Query 947 CTGACTCAAGAAGCTCCAACTTTGTGTTTATGCAGGGTGCTTCCTATAGTTTGAGTAGCA 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CTGACTCAAGAAGCTCCAACTTTGTGTTTATGCAGGGTGCTTCCTATAGTTTGAGTAGCA 747
Query 1007 GAGAACAAGGCGGAAGAAGAATGATGGATTATGACGATGAAAATAGTGATCATGACGCAC 1066
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 748 GAGAACAGGGCGGAAGAAGAATGATGGATTACGACGAAGAAAATAGTGATCATGACGCAC 807
Query 1067 ATACTTCGAAGAGAAAGGATAACGT-Gga-a-gaagaagaagaagaaacagaagaCTATT 1123
|||||||||| |||||||||||||| ||| | ||||||||||||| ||| ||||| ||||
Sbjct 808 ATACTTCGAACAGAAAGGATAACGTGGGAGACGAAGAAGAAGAAGGAACCGAAGATTATT 867
Query 1124 CACAAGGAGACTGTGTTGAAGAGTCTCAAA-TCAAGAGCAATGGTTCATCAGACAATCTG 1182
|||||||||||| |||||||||||| |||| | |||| ||||||||||||||||||||||
Sbjct 868 CACAAGGAGACTCTGTTGAAGAGTCCCAAAGT-AAGAACAATGGTTCATCAGACAATCTG 926
Query 1183 GATCCATTAATAGTAGCCGTCAACAGTTTCCAGACTTTGCAAGAAGCCCTCCAAAAAGAA 1242
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GATCCATTAATAGTGGCCTTCAACAGTTTCCAGACTTTGCAAGAAGCCCTCCAAAAAGAA 986
Query 1243 CTTCAAAAATTCCAAGAGCTTGGGAAAGAAGAACCTATAACATCACTGCATGATGGAGGA 1302
|||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 987 CTTCAAAATTTCCAAGAGCTTGGG--A-AAGAACCTATAACATCACCACATGATGGAGGA 1043
Query 1303 GAAAGCAGCAGTTGCATACACGCAGGACACGAAGGAGCTAGTGAAGCAAGCTCTTCTTAC 1362
||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||| ||
Sbjct 1044 GAAAGTAGCAGTTGCATACATGTGGGACACGAACGAGCTAGTGAAGCAAGTTCTTCTCAC 1103
Query 1363 CGGTTTGGGTCTGAAAAGATGGGAGAAAT-GGAATTAACTTCTCTAGATTCCGAGATACT 1421
| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1104 CAGTTTGGGTCTGAAAAGATGGGAGAAATAGG-ATTAACTTCTCTAGATTCCGAGATACT 1162
Query 1422 AAACCTGGTGAACAATGTAGAGCATCTGGAGATCAAACTAGAAGAAGCAAAGCGTATTCT 1481
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1163 AAACCTGGTGAACAATGTAGAGCATCTGGAGATCAAACTAGAAGAAGCAAAGAGTATTCT 1222
Query 1482 CGAGGTTAAAGAAACACAAATCCGTGAACTCGAATCTACCATAAACGTTTCAGAGACGTG 1541
||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||
Sbjct 1223 AAAGGTTAAAGAAACACAAATACGTGAACTCGAATCTACCATAAGCGTTTCAAAGACGCA 1282
Query 1542 TAACGGAGGAACAGAGATCGGGATAGAAGACATCTTCCAGCAAAAGGTGGAGGCAGAGAT 1601
||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 1283 TAATGGAGGAACAGAGATCGGGATCGAAGAAATCTTCCAGCAAAAGATGGAGGCAGAGAT 1342
Query 1602 TGAATATATCATATTCTCAAGATCAGTGGGAAACCTAAAGAGACGGATCAAACTGATTGA 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1343 TGAATATATCATATTCTCAAGATCAGTGGGAAACCTAAAGAGACGGATCAAACTGATCGA 1402
Query 1662 AGAAGAGAAGACATTGGGGCTATCAAAGCTTGATAAAGCAGAAACAAAAGCTGAGAATCT 1721
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1403 AGAAGAGAAGACATTGGGGTTATCAAAGCTTGAAAAAGCAGAAACAAAAGCTGAGAATCT 1462
Query 1722 AAAGAATCAAGCTCAAGATTTACAAAACCATTGTGTAGAGATCACAGAGATTCAAGAAGT 1781
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1463 AAAGAATCAAGCTCAAGATTTACAAAACCATTGTGTAGCGATCACAGAGATTCAAGAAGT 1522
Query 1782 GGAGTGCCTGAAGAAGAGAGCATTTAAGACCACTAGATGTCTTCTTCTACAGTTAG-GCT 1840
||||| | |||||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct 1523 GGAGTTCTTGAAGAAGAGAGTATATAAGACCACTAGATGTCTTCTTCTACAGTT-GTGCT 1581
Query 1841 TGCTCTTTATACTGTATTATTCTC-TGTTACCAGAACCGGAGATTGCTGTTCCCACATGA 1899
|||| ||||| |||||||||| || |||||||||| ||||||||| |||||||||||||
Sbjct 1582 TGCTTTTTATGCTGTATTATT-TCATGTTACCAGAGTCGGAGATTGATGTTCCCACATGA 1640
Query 1900 TAGTTTTGTTTGATGGAATC 1919
||||||||||||||||||||
Sbjct 1641 TAGTTTTGTTTGATGGAATC 1660
Score = 503 bits (272), Expect = 2e-141
Identities = 323/348 (93%), Gaps = 1/348 (0%)
Strand=Plus/Plus
Query 432 TGATCTTGATAAAGAGTTGAATTCACCGGTTGAGACTTCTCCTCTTATATCAAAAGGATT 491
|||||||||||||||| |||||||||||||||||| ||||| |||||| || ||||||||
Sbjct 128 TGATCTTGATAAAGAGGTGAATTCACCGGTTGAGATTTCTCATCTTATTTCCAAAGGATT 187
Query 492 TGGTTTAAGAAAATGGAAGAGGAGGTTAAGGAGAGATCTTGTTAAGGATGATACTTCTGT 551
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 188 TGGTTTAAGAAAATGGAAGAGGAGGATAAGGAGAGATCTTGTTAAGGATGATACTTCTGT 247
Query 552 GAGTATGGAGAATAGTAAAGCTCTGAAGAGGGTGTTGTCAGGATTAGTTGATCCGAATGC 611
|| ||||||||| ||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 248 GAATATGGAGAACAGTAAAGTTCTGAAGAGGGTGTTGTCGGGGTTAGTTGATCCGAATGC 307
Query 612 TAAACAAATGCATTTGCCAGGACCTGAAGTTAGACAAGATAGTGTTGGTTCTGTTGGCTC 671
|||||| ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 308 TAAACACATGCATTTGCCGGGACCGGATGTTAGACAAGATAGTGTTGGTTCGGTTGGCTC 367
Query 672 GGTGAATAGTGTGGTTGGTTTTGTAATGGGTGGGGAGAGTTATGGCAATGGTCTTGCTTT 731
||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||
Sbjct 368 GGTGAATAGTGTGGTTGGTTTTGCAATAGGTGGGGATAGTCATGGCAATGGTCTTGCTTT 427
Query 732 TGCAGCTGGTGTTGATTCGGATAACAGTGAGGATCGGAGTAGTACAAT 779
||||||||| || ||||||||||| ||||||||| ||||||||| |||
Sbjct 428 TGCAGCTGGCGTGGATTCGGATAATAGTGAGGATTGGAGTAGTA-AAT 474
Score = 126 bits (68), Expect = 5e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 355 TTTTGTGGCGTC-GTCATGGATTTGGAGAGTGAAAGCTCTGTTCTTGAATCTGTTGAAGA 413
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTTTGTACCCTCAGTCATGGATTTGGAGAGTGAAAGCTCTGTTCTTGAATCTGTTGAAGA 64
Query 414 TAATAATGGTTTGATTGGTGA 434
|||||||||||||||||||||
Sbjct 65 TAATAATGGTTTGATTGGTGA 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75342504610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5