BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56230.1
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951826 jgi|Araly1|951826|scaffold_19100002.1 782 0.0
Ahg950280 jgi|Araly1|950280|scaffold_802167.1 774 0.0
> Ahg951826 jgi|Araly1|951826|scaffold_19100002.1
Length=637
Score = 782 bits (423), Expect = 0.0
Identities = 531/583 (91%), Gaps = 7/583 (1%)
Strand=Plus/Plus
Query 26 GGAAAACTCGCCGGGAG-A-ATGACTCCTTCTCCTCCTCCAATAACCTACATATCAATTC 83
|||||||||||||| || | ||||||||| ||||||| ||| |||||||| ||||||||
Sbjct 1 GGAAAACTCGCCGGAAGAATATGACTCCTCCTCCTCCGACAACAACCTACACATCAATTC 60
Query 84 CGCTTCCTACCAACGACGTCGTCTCACGATCAATCCATAATCTCACTACCGCTATCTCTA 143
| ||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 61 CACTTCCTACCGGCGACGTCATCTCTCGATCAATCCATAATCTCACTTCCGCTATCTCTC 120
Query 144 GCCACCGTCCCTGGTCAGAACTCA-TCTTCTCCGGCGATTTCTCTCTCCCGGAGAGCTTT 202
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 121 GCCACCGTCCCTGGTCAGAACT-AGTCTTCTCCGGCGATTTCTCTCTCCCGGAGAGCTTC 179
Query 203 TCCTCTCTTCTCCTCCGATCAAAGACGAATTTCAACTACTTTTTCGTCAACTACACTATC 262
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 180 TCCTCTCTTCTCCTCCGATCAAAGACGAATTTCAACTACTTCTTCGTCAACTACACGATC 239
Query 263 ATCGTCTCCACGTGTGCAGCGTTCGCTCTCATCACAGCTAGTCCCGTCGCTTTAATCGTC 322
||||| |||| || ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 240 GTCGTCGCCACTTGCGCAGCGTTCGCTCTCATCACAGCTAATCCCGTCGCGTTAATCGTC 299
Query 323 GTTGGCGCAATCATCGCCTTGTGGCTTATCTTTCACTTTTTCAGAGAAGATCCACTTATT 382
|| |||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 300 GTCGGCGTAATCATCGTTTTGTGGCTTCTCTTTCACTTCTTCAGAGAAGATCCACTTATT 359
Query 383 CTCTGGAGCTTTCAAGTCGGTGATCGTACGGTGTTGTTGTTTCTAGTCTTAGCTTCCGTT 442
|||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 360 CTCTGGAGCTTTCAGGTCGGTGATCGTACGGTGGTGTTGTTTCTAGTCTTGGCTTCCGTT 419
Query 443 TGGGCTATATGGTTCACTAACTCCGCCGTGAATTTAGCTGTTGGTGTTAGCGTTGGCTTG 502
||||| |||||||||||| |||||||||||| ||||| |||||||| |||||||||||
Sbjct 420 TGGGCCGTATGGTTCACTAGCTCCGCCGTGAACTTAGCGGTTGGTGTCGGCGTTGGCTTG 479
Query 503 CTATTGTGCATTATTCACGCCGT-CTTTAGAAACTCCGATGAGCTTTTCCTTGAGGAAGA 561
|||||||||||||||||| | || ||| |||||||| || ||||||||||||||||||||
Sbjct 480 CTATTGTGCATTATTCACTCTGTTCTT-AGAAACTCGGACGAGCTTTTCCTTGAGGAAGA 538
Query 562 TGATGCTATTAACGGAGGCTTGATCGGGTCTAATCTCCGATGA 604
||||||| ||| |||||||||||||||| |||||||||| |||
Sbjct 539 TGATGCTGTTACCGGAGGCTTGATCGGGCCTAATCTCCG-TGA 580
> Ahg950280 jgi|Araly1|950280|scaffold_802167.1
Length=601
Score = 774 bits (419), Expect = 0.0
Identities = 526/578 (91%), Gaps = 6/578 (1%)
Strand=Plus/Plus
Query 26 GGAAAACTCGCCGGGAG-A-ATGACTCCTTCTCCTCCTCCAATAACCTACATATCAATTC 83
|||||||||||||| || | ||||||||| ||||||| ||| |||||||| ||||||||
Sbjct 1 GGAAAACTCGCCGGAAGAATATGACTCCTCCTCCTCCGACAACAACCTACACATCAATTC 60
Query 84 CGCTTCCTACCAACGACGTCGTCTCACGATCAATCCATAATCTCACTACCGCTATCTCTA 143
| ||||||||| ||| ||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 61 CACTTCCTACCGGCGATGTCATCTCTCGATCAATCCATAATCTCACTTCCGCTATCTCTC 120
Query 144 GCCACCGTCCCTGGTCAGAACTCA-TCTTCTCCGGCGATTTCTCTCTCCCGGAGAGCTTT 202
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 121 GCCACCGTCCCTGGTCAGAACT-AGTCTTCTCCGGCGATTTCTCTCTCCCGGAGAGCTTC 179
Query 203 TCCTCTCTTCTCCTCCGATCAAAGACGAATTTCAACTACTTTTTCGTCAACTACACTATC 262
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 180 TCCTCTCTTCTCCTCCGATCAAAGACGAATTTCAACTACTTCTTCGTCAACTACACGATC 239
Query 263 ATCGTCTCCACGTGTGCAGCGTTCGCTCTCATCACAGCTAGTCCCGTCGCTTTAATCGTC 322
||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 GTCGTCGCCACTTGCGCAGCGTTCGCTCTCATCACAGCTAGTCCCGTCGCGTTAATCGTC 299
Query 323 GTTGGCGCAATCATCGCCTTGTGGCTTATCTTTCACTTTTTCAGAGAAGATCCACTTATT 382
|| |||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 300 GTCGGCGTAATCATCGTTTTGTGGCTTCTCTTTCACTTCTTCAGAGAAGATCCACTTATT 359
Query 383 CTCTGGAGCTTTCAAGTCGGTGATCGTACGGTGTTGTTGTTTCTAGTCTTAGCTTCCGTT 442
|||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 360 CTCTGGAGCTTTCAGGTCGGTGATCGTACGGTGGTGTTGTTTCTAGTCCTGGCTTCCGTT 419
Query 443 TGGGCTATATGGTTCACTAACTCCGCCGTGAATTTAGCTGTTGGTGTTAGCGTTGGCTTG 502
||||| |||||||||||| |||||||||||| ||||| |||||||| |||||||||||
Sbjct 420 TGGGCCGTATGGTTCACTAGCTCCGCCGTGAACTTAGCGGTTGGTGTCGGCGTTGGCTTG 479
Query 503 CTATTGTGCATTATTCACGCCGT-CTTTAGAAACTCCGATGAGCTTTTCCTTGAGGAAGA 561
|||||| |||||| |||| | || ||| |||||||| |||||||||||||||||||||||
Sbjct 480 CTATTGGGCATTACTCACTCTGTTCTT-AGAAACTCTGATGAGCTTTTCCTTGAGGAAGA 538
Query 562 TGATGCTATTAACGGAGGCTTGATCGGGTCTAATCTCC 599
||||||| |||||||||||||||||||| |||||||||
Sbjct 539 TGATGCTGTTAACGGAGGCTTGATCGGGCCTAATCTCC 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22073168943
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5