BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56240.2
Length=3532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495713 jgi|Araly1|495713|fgenesh2_kg.8__1529__AT5G56240.1 4510 0.0
Ahg333231 jgi|Araly1|333231|fgenesh1_pm.C_scaffold_191000002 4106 0.0
> Ahg495713 jgi|Araly1|495713|fgenesh2_kg.8__1529__AT5G56240.1
Length=3496
Score = 4510 bits (2442), Expect = 0.0
Identities = 3196/3534 (90%), Gaps = 156/3534 (4%)
Strand=Plus/Plus
Query 72 AGTGCTTCGttcttcttctctctctcaatctctttcttctcttcaatgctctc-ttctct 130
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 44 AGTGCTTCGTTCTTCTTCTTTCTCTCAATCTCTTTCTTCTCTTCAATGCTCTCTTTCTCT 103
Query 131 ctctaagaaaccacttttttcttcttttGCCAAGAAAATCTAAAGAAGGAGTAAAGAGAA 190
||||||||| ||| ||| || |||| |||||||||||| | | |||| | |||| ||
Sbjct 104 CTCTAAGAAGCCA-TTTCTT-TTCTCTTGCCAAGAAAAACCATCTAAGGTTTTAAGATAA 161
Query 191 GAGTCAGATTTGGATAGGTGATGATAAAGAAGATCTGGTGTTATGCAGAAGTATTT--G- 247
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 162 GAGTCAGATTTAGCTAGGTGATGATAAAGAAGATCTGGTGTTATGCGGAAGTATTTGGGA 221
Query 248 -G-GAA-ACGAAGAGGCAAATAGTAACAGTGGAAGAATCAAATGTTCTTATCCACTGAGA 304
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 AGCGAAGAGGAAGAGGCAAATAGTAACAGTGGAAGAATCAAATGTTCTTATCCACTGAGA 281
Query 305 ACCCACCAAATGACCCActttcttcttcttcttctcctttcttac-aacatctcacctct 363
||||||||||||||||||||||||||||||||||||| | ||| | ||||||| || ||
Sbjct 282 ACCCACCAAATGACCCACTTTCTTCTTCTTCTTCTCC-TCCTTTCTTACATCTCCCCACT 340
Query 364 tcttcCCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTCCATCAGAGATTACGCATAT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TCTTCCCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTCCATCAGAGATTACGCATAT 400
Query 424 AGTAACAGGAAGAACAACATTAAGAACAATTGGCCATTTTCCTCAAAAAGTCTCCAGCTT 483
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 401 AGTAACCGGAAGAACAACATCAAGAACAATTGGCCATTTTCCTCAAAAAGTCTCCAACTT 460
Query 484 TTCTCAACTCATGGCGTAACTAATCCTTTACCACCGTTTCAG-AAGTTTTCCACAGTAAG 542
||||||||||||||| ||||| ||||||| |||||||| ||| ||| ||||||| |||||
Sbjct 461 TTCTCAACTCATGGCATAACTGATCCTTTGCCACCGTTACAGAAAG-TTTCCACCGTAAG 519
Query 543 TAGCAAGTTTGAGACCACTGCTAGTCCGTCTTCCGGGAAGCAAATAGTATCATCCTATGT 602
|| | |||||||||||| |||||| | || || ||||||||||| | | |||||||||
Sbjct 520 TAACCAGTTTGAGACCAAGGCTAGTTCATCGTCGGGGAAGCAAATCG--T-ATCCTATGT 576
Query 603 TCATCAAGGAAGAGATTTGGATTTGGCTAAACTTGGGTTAAATCAGACAGTAGCAGAGAC 662
|||||| || | ||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 577 TCATCATGG-A-AGA----GATTTGGCTAAACTTGGGTTGAATCAGACATTAGCAGAGAC 630
Query 663 TAGTAGTAA--AGGAGTTTGTAGCCAATCAAGAATCATCGAGAATGGTTTGTTTCCGAGC 720
||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 631 TAGTA--AAGGAGGAGTTAGTAGCCAATCAAGAATCATCGAGAATGGTTTGTTTTCGAGT 688
Query 721 ACAAGTGTTTCCAAGTCTGAAGTAGAGATACTAGTAGCTACTACAAGTAACAAGAAGGAC 780
|||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 689 ACAAGTGTTTCCAAGTCTGAAGTAGAGATAGTTGTAGCTGCTACAAGTAACAAGAAGGAC 748
Query 781 AACCACAGTAGAAAGTGTGGACGAGGGATGGTGAAATCTAAAGAAGATAGTTGTGCTGGC 840
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 749 AACCACAGTAAAAAGTGTGGAAGAGGGATGGTGAAATCTAAAGAAGATAGTTGTGGTGGC 808
Query 841 CTTGTGACGACTTCTGAGTCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTC 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CTTGTGACGACTTCTGAATCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTC 868
Query 901 TCTTCAGCTTCTAACACAACTTTGAATGCTCACATCGATCAGTGTCTGTCTGTTGACTCA 960
|| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 869 TCCTCAGCTTCTAACACAACTTTGAATGCTCACATCGACCAGTGTTTGTCTGTTGACTCA 928
Query 961 GCACTACTACCACCGGTTGTTTTTAGTAAGCCAAACAAGCCTAGAAGTAAGCCACCACGG 1020
| | ||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 929 G--C-ACTGCCACCGGTTGTTAGTAGTAAGCCAAACAAGCCTAGAAGTAAG---CCACGG 982
Query 1021 GTGAAAGTTAAAACAATGGTTGATATCTACGCTTCTGCGAAACAAGGCACGTTAGAAGAT 1080
|||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 983 GTGAAAGTTAAAACGATGGTTGATATCTACGCTTCTGCGAAAGAAGGCACATTAGAAGAT 1042
Query 1081 CTTGATAGAAGAAATGGAACAAAGTGGGTGTCGATTTTGAGTTATTCAAATAGAGTTGTT 1140
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1043 CTTGATAAAAGAAATGGAACAAAGTGGGTGTCGATTTTGAGTTATACAAATAGAGTTGTT 1102
Query 1141 GCTGATAAGTCTGAAGTGTCTAAGAAGCGGAAAGTCTCGCCTGTTGGTGTTGGTCCGGTT 1200
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1103 GCTGAGAAGTCTGAAGTGTCTAAGAAGCGGAAAGTTTCGCCTGTTGGCGTTGGTCCGGTT 1162
Query 1201 TATATTGATGCTAAGGGACAGAAATTGCGGATTTTATCCGGGTTCAGCGAGAAGAAGAGT 1260
||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1163 TATATTGATGCTAAGGGGCAGAAATTGCGGATTTTATCTGAGTTCAGCGAGAAGAAGACT 1222
Query 1261 TCTACTACTCCGTTGAGGGAGCAGCATGAGGATGGTAGTAGTGATAAGAAATGTTTAGGC 1320
||||||||||||| ||| || |||||||||||||||||| ||| ||||||||||||| ||
Sbjct 1223 TCTACTACTCCGTCGAGAGAACAGCATGAGGATGGTAGTGGTGGTAAGAAATGTTTAAGC 1282
Query 1321 CAAGGTAGTAAAGGGACCAATAAAAGCTTGAGGAAAATTCGCCGTGGAAAGAAACCTCAC 1380
|||||||||||||| | ||||||| |||||||||||||||| || | |||||| ||||||
Sbjct 1283 CAAGGTAGTAAAGGAAACAATAAATGCTTGAGGAAAATTCGTCGAGTAAAGAAGCCTCAC 1342
Query 1381 AAGTTTGTTAAACTAACCAATCACAAAGCCGATGGTCCAGAGCAGATACGC-GGAG-TGC 1438
|||| |||||||||||||||||||||||| ||| ||| || |||||| | |||| | |
Sbjct 1343 AAGTATGTTAAACTAACCAATCACAAAGCTAATGCTCC--AG-AGATAC-CTGGAGAT-C 1397
Query 1439 AAAGAGGGTTTTCTGGAGAAGGTAGTCACA-TGGGTCATCATCGTAGAATCTATAATCAA 1497
||||||| |||||||||||||||||||||| | |||||||| ||||||| |||||||
Sbjct 1398 AAAGAGGTTTTTCTGGAGAAGGTAGTCACACT-GGTCATCA---TAGAATCCATAATCAG 1453
Query 1498 CGGATGCTAGCAAAACGTGGTCTGGTTTCAAAGAAGCTAAATGAGAAAGGACATG----A 1553
||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 1454 CGGATGCTAGCGAAACGTGGTCTGATTTTGAAGAAGCTAAATGAGAAAGGACATGATTTA 1513
Query 1554 -A----TT-----ATCTG--A--AGATGATGAAGATACATGGTCAGGAGGAGATCCTACT 1599
| || ||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1514 TATGGTTTGCGGGATCAGCTATCGGATGATGAAGATACATGGTCAGGAGGAGATCCTACT 1573
Query 1600 GTGTTGAGAGGTACTGATTTGTCTGCCACAGATTCTTATCCTTTAAAGAAACAGAAGCTG 1659
|||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1574 GTGTTGAGAGGTACTGATTTGTTTGCCACAGATTCTTATCCTTTATATAAACAGAAGCTG 1633
Query 1660 GGGAGCGAAGTTGCTGGACGAAAAAAGACTTTGTTTAGGAGTCAAAGTGCTCAAAGTCGT 1719
||||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1634 GGGAGCGAAGTTGCTCGACCAAAAAAGGCTTTGTTTGGGAGTAAAAGTGCTCAAAGTCGT 1693
Query 1720 TCATTTAGAGTCCCTCAGAGTGAAAAAGAGGATGAGTCACTTGAGGGAGTT--AATATAA 1777
||||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||
Sbjct 1694 TCATTTAGAGTCCCTCAGAGTGAAAAAGAAGATGAGTCACTTGAGGGAATTCAAATA-AA 1752
Query 1778 -A----CCGATTAAAGAAGAGCGTTGCTTCATTTCAAGAAGATAAGTATCCACCTGGAAA 1832
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1753 CACTCTCCGATTAAAGAAGAGCATTGCTTCATTTCAAGAAGATAAGTATCCACCTGGAAA 1812
Query 1833 G-A---------AG-T--T-T---TG-CTCAGATGCATCTCCTCGTGGAACTAGCATGAG 1874
| | || | | | || ||||||||||||||||||||||||||||||||
Sbjct 1813 GAATTTCTGCTCAGATGCTGTAGATGTTTCAGATGCATCTCCTCGTGGAACTAGCATGAG 1872
Query 1875 AAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGACGACTATCTATGCCTGTGGAGCT 1934
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1873 AAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGGCGACTATCTGTGCCTGTGGAGCT 1932
Query 1935 AAAGAAAGCTCGGTTGGATTTCTCTGAGGAAAAAGATGATGAAGAAACAGGGAAATGGGA 1994
||| |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 1933 AAATAAAGCTCGGTTGGATTTCTCGGAGGAAGAAGATGAAGAAGAAACAGGGAAATGGGA 1992
Query 1995 ATCTGAAATGACTCATGAACGTGAGCTGCGAGATGATGATTATGTTTCTGGTGATGATGG 2054
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 1993 ATCTGAAATGACTCAAGAACGTGAGCTGCCAGATAATGATTATGTTTCTGGTGATAATGG 2052
Query 2055 GGAAA-ATAATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTATA 2113
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 AGAAAGA-AATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTATA 2111
Query 2114 ATGATGATGACGAAGAAAGTAGTGAAGAGGAAGGAGATAATAACAAAAGAGCTCATGTGT 2173
||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 2112 ATGATGATGACGACGAAAGTAGTGAAGAGGAAGAAGCTAATAACAAAAGAGCTCATGTTT 2171
Query 2174 TGGACCAAACCGATTATACAGGTGCTGAGTTCTACCAGTCAGAGTCAGACAGTCCAACAT 2233
||||| |||| ||| ||| |||||||||||||| | | |||||||||||||| |||
Sbjct 2172 TGGACAAAACTGATGATATGGGTGCTGAGTTCTA-C---C--AGTCAGACAGTCCACCAT 2225
Query 2234 CTATTGAAATCTTACCCAGCGAGCGAGCAATGTATTACTCCGAAGCTGGGAATATGATTT 2293
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 2226 CTATTGAAATCTTACCCAGAGAGCGAGCAATGTATTACTCCGAAGTTGGGAATATGATTT 2285
Query 2294 ACGGGCAAACCTCTTGCAAGGAGGATGAAAGGTTTGATTCTGAAGTAGGACAAGGAAGCT 2353
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct 2286 ACGGGCAAACCTCTTGCAAGGAGAATGAAAGGTTTGATTCTGAAGTTGGACAAGGAGGCT 2345
Query 2354 TATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAGTC 2413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 TATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAGTC 2405
Query 2414 CTAGAGATATGGGTTTTGATGAAAATCTTGGGAACTCGTCGGTTATTACAAGCCAGGTTC 2473
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2406 CTCGAGATATGGGTTTTGATGAGAATCTTGGGAACTCGTCGGTTATCACAAGCCAGGTTC 2465
Query 2474 AATCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCTGTTTCAA 2533
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2466 AGTCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCAGTTTCAA 2525
Query 2534 ACTTTGCAGCTGGTAGATTGAATTTTCCTGCTGAGTTATC-T-T-CTTTCCGAGAAAATT 2590
|||||||||||||||||||||||||||| || |||||||| | | |||||||||||||||
Sbjct 2526 ACTTTGCAGCTGGTAGATTGAATTTTCCCGCAGAGTTATCTTCTACTTTCCGAGAAAATT 2585
Query 2591 TCTCCCCGGATATTGCCATGTCCTACTCAACAACCCCGATGAGCTTTTGTGTTCCATCTC 2650
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2586 TCTCACCGGATATTGCCATGTCCTACTCAACAACCCCGATGAGCTTTTGTGTTCCATCTC 2645
Query 2651 ATCATGGGACAATCACTGAGGCTGAGCCAATTACCATTGACAAGACAATATCACCTTCCA 2710
|| ||||||||| | | ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2646 ATTATGGGACAA-C-C-GAGGCTGAGCCAATTACCATTGACAAGACAACATTACCTTCCA 2702
Query 2711 GATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGAGG 2770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2703 GATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGAGG 2762
Query 2771 GCATTACTTTGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTCAA 2830
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2763 GCATTACTCGGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTCAA 2822
Query 2831 ACACCATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCAGT 2890
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2823 TCACGATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCAGT 2882
Query 2891 CACCATACAAGACCCAACAAGCTTTGGATCTTCAGATGAGTAAGTTCTCCAGCAGGAA-G 2949
|||||||||||| ||||||||||||||||| || | ||||||||||||||||| ||| |
Sbjct 2883 CACCATACAAGATCCAACAAGCTTTGGATC-TC-CA-GAGTAAGTTCTCCAGCA-GAACG 2938
Query 2950 AGTCTCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAAAA 3009
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2939 AATCCCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAAAA 2998
Query 3010 GACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCAAGCTTAACA 3069
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2999 GACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCTAGCTTAACA 3058
Query 3070 CCAAATCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTTAACACAGGT 3129
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3059 CCAACCCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTCAACACAGGT 3118
Query 3130 CTCTACTTAAGAAACAGTTTCGATTCAACACATCAACCACAAGTTCAAGCACAAC-A-A- 3186
||||| ||||||||||||||||| |||||||| |||||||||| ||| | |||| | |
Sbjct 3119 CTCTATTTAAGAAACAGTTTCGAGTCAACACAACAACCACAAGCCCAAACCCAACCACAA 3178
Query 3187 C-A-ATC-ACAAGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTCCG 3243
| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3179 CCACAACCACAAGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTCCG 3238
Query 3244 AGCTAGTCATCACCGCAAAGTAAAGTTTCAACCTTGATGCAGTGTAAGAAGCAACCAAGA 3303
||||||||| | | | ||||||||| |||||||||||||||||||||||||| |||
Sbjct 3239 AGCTAGTCA-C-C-G-----TAAAGTTTCGACCTTGATGCAGTGTAAGAAGCAACCGAGA 3290
Query 3304 AGTGGGTTCTCTTCGAAAACCGATCATCGAACATGGGTGCATT-GGTGTTTTTAAGGTAG 3362
|||||||||||||||||||||||||||| ||||||| |||||| || ||||| | |
Sbjct 3291 AGTGGGTTCTCTTCGAAAACCGATCATCAAACATGGATGCATTCGG-GTTTTCAT--T-- 3345
Query 3363 ATTCCAAATGTTCTACAACATTTTCTATGCTTCATCTCTTTCTGCAGAGACTGTGTAGTA 3422
||| | || | | |||| | || | | | | ||||||||| ||| |||
Sbjct 3346 -TTCTA--TGCT-T-CAAC-T---CT-T--T-C-T--------GCAGAGACTTTGT-GTA 3382
Query 3423 GTTTACTGTTTACaaaaaaaaaaGCAAACACTTGAAAATAACA--C--TCTGTAGAAGGA 3478
||| ||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 3383 GTT-ACTATTTACAAAAGAAAAAGCAAACACTTGAAAATAACAAACACTCTGTAGAAGGA 3441
Query 3479 TAAGTAACTTCAGACTTTTAATGCCAACTAAAGTTATAAACTTATAGTTTATCT 3532
|||||||||| || |||||| ||||| | |||||||| || |||||||||||||
Sbjct 3442 TAAGTAACTTAAGGCTTTTATTGCCACC-AAAGTTATCAAGTTATAGTTTATCT 3494
> Ahg333231 jgi|Araly1|333231|fgenesh1_pm.C_scaffold_191000002
Length=2952
Score = 4106 bits (2223), Expect = 0.0
Identities = 2763/3008 (92%), Gaps = 100/3008 (3%)
Strand=Plus/Plus
Query 286 ATGTTCTTATCCACTGAGAACCCACCAAATGACCCActttcttcttcttcttctcctttc 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 ATGTTCTTATCCACTGAGAACCCACCAAATGACCCACTTTCTTCTTCTTCTTCTCC-TCC 59
Query 346 ttac-aacatctcacctcttcttcCCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTC 404
|| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTCTTACATCTCCCCACTTCTTCCCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTC 119
Query 405 CATCAGAGATTACGCATATAGTAACAGGAAGAACAACATTAAGAACAATTGGCCATTTTC 464
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 120 CATCAGAGATTACGCATATAGTAACCGGAAGAACAACATCAAGAACAATTGGCCATTTTC 179
Query 465 CTCAAAAAGTCTCCAGCTTTTCTCAACTCATGGCGTAACTAATCCTTTACCACCGTTTCA 524
||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||| ||
Sbjct 180 CTCAAAAAGTCTCCAACTTTTCTCAACTCATGGCATAACTGATCCTTTGCCACCGTTACA 239
Query 525 G-AAGTTTTCCACAGTAAGTAGCAAGTTTGAGACCACTGCTAGTCCGTCTTCCGGGAAGC 583
| ||| ||||||| ||||||| | |||||||||||| |||||| | || || |||||||
Sbjct 240 GAAAG-TTTCCACCGTAAGTAACCAGTTTGAGACCAAGGCTAGTTCATCGTCGGGGAAGC 298
Query 584 AAATAGTATCATCCTATGTTCATCAAGGAAGAGATTTGGATTTGGCTAAACTTGGGTTAA 643
|||| | | ||||||||||||||| || | ||| |||||||||||||||||||| |
Sbjct 299 AAATCG--T-ATCCTATGTTCATCATGG-A-AGA----GATTTGGCTAAACTTGGGTTGA 349
Query 644 ATCAGACAGTAGCAGAGACTAGTAGTAA--AGGAGTTTGTAGCCAATCAAGAATCATCGA 701
|||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 350 ATCAGACATTAGCAGAGACTAGTA--AAGGAGGAGTTAGTAGCCAATCAAGAATCATCGA 407
Query 702 GAATGGTTTGTTTCCGAGCACAAGTGTTTCCAAGTCTGAAGTAGAGATACTAGTAGCTAC 761
||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||| |
Sbjct 408 GAATGGTTTGTTTTCGAGTACAAGTGTTTCCAAGTCTGAAGTAGAGATAGTTGTAGCTGC 467
Query 762 TACAAGTAACAAGAAGGACAACCACAGTAGAAAGTGTGGACGAGGGATGGTGAAATCTAA 821
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 468 TACAAGTAACAAGAAGGACAACCACAGTAAAAAGTGTGGAAGAGGGATGGTGAAATCTAA 527
Query 822 AGAAGATAGTTGTGCTGGCCTTGTGACGACTTCTGAGTCAATAATGGCTTCAAAAACATG 881
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 528 AGAAGATAGTTGTGGTGGCCTTGTGACGACTTCTGAATCAATAATGGCTTCAAAAACATG 587
Query 882 TCCTATTTGCAAAACCTTCTCTTCAGCTTCTAACACAACTTTGAATGCTCACATCGATCA 941
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 588 TCCTATTTGCAAAACCTTCTCCTCAGCTTCTAACACAACTTTGAATGCTCACATCGACCA 647
Query 942 GTGTCTGTCTGTTGACTCAGCACTACTACCACCGGTTGTTTTTAGTAAGCCAAACAAGCC 1001
|||| ||||||||||||||| | ||| |||||||||||| ||||||||||||||||||
Sbjct 648 GTGTTTGTCTGTTGACTCAG--C-ACTGCCACCGGTTGTTAGTAGTAAGCCAAACAAGCC 704
Query 1002 TAGAAGTAAGCCACCACGGGTGAAAGTTAAAACAATGGTTGATATCTACGCTTCTGCGAA 1061
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 705 TAGAAGTAAG---CCACGGGTGAAAGTTAAAACGATGGTTGATATCTACGCTTCTGCGAA 761
Query 1062 ACAAGGCACGTTAGAAGATCTTGATAGAAGAAATGGAACAAAGTGGGTGTCGATTTTGAG 1121
| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 762 AGAAGGCACATTAGAAGATCTTGATAAAAGAAATGGAACAAAGTGGGTGTCGATTTTGAG 821
Query 1122 TTATTCAAATAGAGTTGTTGCTGATAAGTCTGAAGTGTCTAAGAAGCGGAAAGTCTCGCC 1181
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 822 TTATACAAATAGAGTTGTTGCTGAGAAGTCTGAAGTGTCTAAGAAGCGGAAAGTTTCGCC 881
Query 1182 TGTTGGTGTTGGTCCGGTTTATATTGATGCTAAGGGACAGAAATTGCGGATTTTATCCGG 1241
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 882 TGTTGGCGTTGGTCCGGTTTATATTGATGCTAAGGGGCAGAAATTGCGGATTTTATCTGA 941
Query 1242 GTTCAGCGAGAAGAAGAGTTCTACTACTCCGTTGAGGGAGCAGCATGAGGATGGTAGTAG 1301
||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||| |
Sbjct 942 GTTCAGCGAGAAGAAGACTTCTACTACTCCGTCGAGAGAACAGCATGAGGATGGTAGTGG 1001
Query 1302 TGATAAGAAATGTTTAGGCCAAGGTAGTAAAGGGAC-CAATAAAAGCTTGAGGAAAATTC 1360
|| ||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||
Sbjct 1002 TGGTAAGAAATGTTTAAGCCAAGGTAGTAAA-GGACACAATAAATGCTTGAGGAAAATTC 1060
Query 1361 GCCGTGGAAAGAAACCTCACAAGTTTGTTAAACTAACCAATCACAAAGCCGATGGTCCAG 1420
| || | |||||| |||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1061 GTCGAGTAAAGAAGCCTCACAAGTATGTTAAACTAACCAATCACAAAGCTAATGCTCC-- 1118
Query 1421 AGCAGATACGC-GGAG-TGCAAAGAGGGTTTTCTGGAGAAGGTAGTCACA-TGGGTCATC 1477
|| |||||| | |||| | |||||||| |||||||||||||||||||||| | |||||||
Sbjct 1119 AG-AGATAC-CTGGAGAT-CAAAGAGGTTTTTCTGGAGAAGGTAGTCACACT-GGTCATC 1174
Query 1478 ATCGTAGAATCTATAATCAACGGATGCTAGCAAAACGTGGTCTGGTTTCAAAGAAGCTAA 1537
| ||||||| ||||||| ||||||||||| |||||||||||| |||| ||||||||||
Sbjct 1175 A---TAGAATCCATAATCAGCGGATGCTAGCGAAACGTGGTCTGATTTCGAAGAAGCTAA 1231
Query 1538 ATGAGAAAGGACATGAATTATCTGAAGATGATGAAGATACATGGTCAGGAGGAGATCCTA 1597
||||||||||||||| | || | || || |||||||||||||||||||||||||
Sbjct 1232 ATGAGAAAGGACATG-A--AT-T----AT-AT---GATACATGGTCAGGAGGAGATCCTA 1279
Query 1598 CTGTGTTGAGAGGTACTGATTTGTCTGCCACAGATTCTTATCCTTTAAAGAAACAGAAGC 1657
|||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 1280 CTGTGTTGAGAGGTACTGATTTGTTTGCCACAGATTCTTATCCTTTATATAAACAGAAGC 1339
Query 1658 TGGGGAGCGAAGTTGCTGGACGAAAAAAGACTTTGTTTAGGAGTCAAAGTGCTCAAAGTC 1717
||||||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||||
Sbjct 1340 TGGGGAGCGAAGTTGCTCGACCAAAAAAGGCTTTGTTTGGGAGTAAAAGTGCTCAAAGTC 1399
Query 1718 GTTCATTTAGAGTCCCTCAGAGTGAAAAAGAGGATGAGTCACTTGAGGGAGTT--AATAT 1775
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 1400 GTTCATTTAGAGTCCCTCAGAGTGAAAAAGAAGATGAGTCACTTGAGGGAATTCAAATA- 1458
Query 1776 AA-A----CCGATTAAAGAAGAGCGTTGCTTCATTTCAAGAAGATAAGTATCCACCTGGA 1830
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1459 AACACTCTCCGATTAAAGAAGAGCATTGCTTCATTTCAAGAAGATAAGTATCCACCTGGA 1518
Query 1831 AAG-A---------AG-T--T-T---TG-CTCAGATGCATCTCCTCGTGGAACTAGCATG 1872
||| | || | | | || ||||||||||||||||||||||||||||||
Sbjct 1519 AAGAATTTCTGCTCAGATGCTGTAGATGTTTCAGATGCATCTCCTCGTGGAACTAGCATG 1578
Query 1873 AGAAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGACGACTATCTATGCCTGTGGAG 1932
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1579 AGAAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGGCGACTATCTGTGCCTGTGGAG 1638
Query 1933 CTAAAGAAAGCTCGGTTGGATTTCTCTGAGGAAAAAGATGATGAAGAAACAGGGAAATGG 1992
||||| |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 1639 CTAAATAAAGCTCGGTTGGATTTCTCGGAGGAAGAAGATGAAGAAGAAACAGGGAAATGG 1698
Query 1993 GAATCTGAAATGACTCATGAACGTGAGCTGCGAGATGATGATTATGTTTCTGGTGATGAT 2052
||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 1699 GAATCTGAAATGACTCAAGAACGTGAGCTGCCAGATAATGATTATGTTTCTGGTGATAAT 1758
Query 2053 GGGGAAA-ATAATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTA 2111
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 GGAGAAAGA-AATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTA 1817
Query 2112 TAATGATGATGACGAAGAAAGTAGTGAAGAGGAAGGAGATAATAACAAAAGAGCTCATGT 2171
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1818 TAATGATGATGACGACGAAAGTAGTGAAGAGGAAGAAGCTAATAACAAAAGAGCTCATGT 1877
Query 2172 GTTGGACCAAACCGATTATACAGGTGCTGAGTTCTACCAGTCAGAGTCAGACAGTCCAAC 2231
|||||| |||| ||| ||| |||||||||||||| | | |||||||||||||| |
Sbjct 1878 TTTGGACAAAACTGATGATATGGGTGCTGAGTTCTA-C---C--AGTCAGACAGTCCACC 1931
Query 2232 ATCTATTGAAATCTTACCCAGCGAGCGAGCAATGTATTACTCCGAAGCTGGGAATATGAT 2291
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1932 ATCTATTGAAATCTTACCCAGAGAGCGAGCAATGTATTACTCCGAAGTTGGGAATATGAT 1991
Query 2292 TTACGGGCAAACCTCTTGCAAGGAGGATGAAAGGTTTGATTCTGAAGTAGGACAAGGAAG 2351
||||||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||
Sbjct 1992 TTACGGGCAAACCTCTTGCAAGGAGAATGAAAGGCTTGATTCTGTAGTTGGACAAGGAAG 2051
Query 2352 CTTATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAG 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 CTTATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAG 2111
Query 2412 TCCTAGAGATATGGGTTTTGATGAAAATCTTGGGAACTCGTCGGTTATTACAAGCCAGGT 2471
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2112 TCCTCGAGATATGGGTTTTGATGAGAATCTTGGGAACTCGTCGGTTATCACAAGCCAGGT 2171
Query 2472 TCAATCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCTGTTTC 2531
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2172 TCAGTCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCAGTTTC 2231
Query 2532 AAACTTTGCAGCTGGTAGATTGAATTTTCCTGCTGAGTTATC-T-T-CTTTCCGAGAAAA 2588
|||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||
Sbjct 2232 AAACTTTGCAGCTGGTAGATTGAATTTTCCAGCAGAGTTATCTTCTACTTTCCGAGAAAA 2291
Query 2589 TTTCTCCCCGGATATTGCCATGTCCTACTCAACAACCCCGATGAGCTTTTGTGTTCCATC 2648
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2292 TTTCTCACCGGATATTGCCATGTCCTACTCAACAACCTCGATGGGCTTTTGTGTTCCATC 2351
Query 2649 TCATCATGGGACAATCACTGAGGCTGAGCCAATTACCATTGACAAGACAATATCACCTTC 2708
|||||||||||||| | | ||||||||||||||||||||||||||||||| || ||||||
Sbjct 2352 TCATCATGGGACAA-C-C-GAGGCTGAGCCAATTACCATTGACAAGACAACATTACCTTC 2408
Query 2709 CAGATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGA 2768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2409 CAGATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGA 2468
Query 2769 GGGCATTACTTTGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTC 2828
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2469 GGGCATTACTCGGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTC 2528
Query 2829 AAACACCATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCA 2888
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2529 AATCACGATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCA 2588
Query 2889 GTCACCATACAAGACCCAACAAGCTTTGGATCTTCAGATGAGTAAGTTCTCCAGCAGGAA 2948
|||||||||||||| ||||||||||||||||| || | ||||||||||||||||| |||
Sbjct 2589 GTCACCATACAAGATCCAACAAGCTTTGGATC-TC-CA-GAGTAAGTTCTCCAGCA-GAA 2644
Query 2949 -GAGTCTCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAA 3007
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2645 CGAATCCCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAA 2704
Query 3008 AAGACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCAAGCTTAA 3067
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2705 AAGACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCTAGCTTAA 2764
Query 3068 CACCAAATCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTTAACACAG 3127
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2765 CACCAACCCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTCAACACAG 2824
Query 3128 GTCTCTACTTAAGAAACAGTTTCGATTCAACACATCAACCACAAGTTCAAGCACAAC-A- 3185
||||||| ||||||||||||||||| |||||||| |||||||||| ||| | |||| |
Sbjct 2825 GTCTCTATTTAAGAAACAGTTTCGAGTCAACACAACAACCACAAGCCCAAACCCAACCAC 2884
Query 3186 A-C-A-ATC-ACAAGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTC 3241
| | | | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2885 AACCACAACCACAAGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTC 2944
Query 3242 CGAGCTAG 3249
||||||||
Sbjct 2945 CGAGCTAG 2952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133391793365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5