BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56250.2
Length=2985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495715 jgi|Araly1|495715|fgenesh2_kg.8__1531__AT5G56250.1 3845 0.0
Ahg495713 jgi|Araly1|495713|fgenesh2_kg.8__1529__AT5G56240.1 230 6e-59
Ahg333231 jgi|Araly1|333231|fgenesh1_pm.C_scaffold_191000002 230 6e-59
> Ahg495715 jgi|Araly1|495715|fgenesh2_kg.8__1531__AT5G56250.1
Length=3110
Score = 3845 bits (2082), Expect = 0.0
Identities = 2628/2873 (91%), Gaps = 112/2873 (4%)
Strand=Plus/Plus
Query 90 AGGTTTCATAGGCTCTCAGATTTGGTATTATAAAGATCTGGTGTTATGCAGAAGAGCAGG 149
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 233 AGGTTTCATAGGCTCACAAATTTGGTATTATAAAGATCTGGTGTTATGCAGAAGAGCA-G 291
Query 150 GACGACAAGGTTGATAAAAGTGAAGAAGTGAATAGTAGTAACAGTGGAAGAAGAATCAAA 209
| | ||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 292 G--GTCAAGG-T--CAAAAGTGAAGAAGTGAATAGTAGTAACAGTGGAAGAAGTATCAAA 346
Query 210 TGTTCTTATCATCCACTGATCAAAGAAGCCCTTCTAATAACAATCCATCATCTTCTTCTA 269
|||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 347 TGTTCTTATCATCCACTGATCAAACAAGTCCTTCTAACAACAATCCATCATCTTCTTCTA 406
Query 270 GTTTCTTACATCTGACCAACTCTTGTGATGAGTTAGGTCAATCACATCTTTCAACTTTCT 329
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 407 ATTTCTTACATCTGACCAACTCTTGTGATGAGTTAGGTCAATCACATCTTTCAAGTTTCT 466
Query 330 CCATCAGAGATTATGCATTTAGTTACCGGACCAAGAACATCAAGAAAAGTTGGCCTTTTT 389
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 467 CCATCAGAGATTATGCATTTAGTTACCGGACCAAGAACATCAAGAAAAGCTGGCCTTTTT 526
Query 390 CCTCAACAAGTTTGCAACTTTGTTTAAATCATGGCTTAACTGATCCATTGCCACCG---- 445
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 527 CCTCAACAAGTTTGCAACTTTGTTTAAAACATGGCTTAAGTGATCCATTGCCACCGATTC 586
Query 446 A-----TT--CA----G---------CCTCCTGAAGTGAAGAAGCCAAACATAACTCATG 485
| || || | ||||||||||||||||||||||||||||||||||
Sbjct 587 AGCCTCTTGGCACTGTGATAAACCATCCTCCTGAAGTGAAGAAGCCAAACATAACTCATG 646
Query 486 TGGAAGCGGTAAGTCACAAGAGAAAGTCAGAGAAACTTGGCTCTTATCAGATATTAGTAG 545
| |||||| ||||| |||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 647 TCGAAGCGATAAGTAACAAGAAAAAGTCAGAGAAACTTGGCTCTAATCAGACATTAGTAG 706
Query 546 AGACTACTAAACAAGGATTTGAGAATGGTTTGTTGGCGAGTGGTTCGAAATCCAAAATAC 605
||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGA-T--TAAACAAGGCTTTGAGAATGGTTTGTTGGCGAGTGGTTCGAAATCCAAAATAC 763
Query 606 AAGTAGCTATGGTTAACAAGAATCCTAGAAAAAAGTGTGGGTTGA-TAGTGAAACCTGGA 664
|||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 764 AAGTAGCTATGGCTAACAAGAATCCTAGAAAAAAGGGTGGGTT-AGTAGTGAAACCTGGA 822
Query 665 GCTTGTGTGGATAGTGG-TGGAAAAGAAGATCATAGTAGCCTCTTTTCAGCTTCTGATTC 723
||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||
Sbjct 823 GCTTGTGTGGATAGTGGAT-CAAAAGAAGATCATAGTTGCCTCTTTTCAGCTTCTGAATC 881
Query 724 TATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTTCTAACACTACTTT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTTCTAACACTACTTT 941
Query 784 AAATGCGCACATTGATCAGTGTCTGTCTGTTGACTCGGGGCAGCAGCCGATTCGTAAGCC 843
|||||||||||| ||||||||||||||||| ||| |||| ||||||| |||| |||||||
Sbjct 942 AAATGCGCACATGGATCAGTGTCTGTCTGTAGACACGGGACAGCAGCGGATTAGTAAGCC 1001
Query 844 AAACAGGCCTAAGACTAAGCCACGGTTGAAAGTTAAAACCATGACTGATATCTATGCTTC 903
||||||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||
Sbjct 1002 AAACAGGCCTAAGACTAAGCCACGGTTGAAAGTTAAATCGATGAGTGATATCTACGCTTC 1061
Query 904 TGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAATGGCACAAAGTGGGCTATGAT 963
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1062 TGCAAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAATGGAACTAAGTGGGCTATGAT 1121
Query 964 TTCGAGCTACTCTAACCGTGTTGTCTCTGATGATAAGCCTGAAGT-GTCCAACAAAGTAA 1022
|||||||||||||||||| ||||| |||||| ||||||||||||| | ||||||||| ||
Sbjct 1122 TTCGAGCTACTCTAACCGGGTTGTGTCTGATAATAAGCCTGAAGTCG-CCAACAAAGAAA 1180
Query 1023 AGAAGCGAAGCGTGTCGCGTGCTCGCATTGATGAAGATGCTGCTGGCATTGGACCTGTTT 1082
||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AGAAGCGGAGCGTGTTGCATGTTCGCATTGATGAAGATGCTGCTGGCATTGGACCTGTTT 1240
Query 1083 ACATTGATGCTAAGGGCCAAAAACTGCGGATTTTATCTAAGTTTAACGAGAAAGCTTCTG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 ACATTGATGCTAAGGGCCAAAAACTGCGGATTTTATCTAAGTTTAACGAGAAAGCTTCTG 1300
Query 1143 ATCCATCAAGAAGAGAGCATGAAGAAGTTTGTGAGAAGAAATCTTCTAGTGAAGGTAAAG 1202
|||||| |||| ||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1301 ATCCATTAAGA-GAG--CATGGAGATGTTTGTGAGAAGAAATCTTCTAGTGAAGGTAAAG 1357
Query 1203 GGGGCAAAAGCTTTAGGAAAAAACTTTGGGGAGAGAAACATTACAAGCATCGTAAACTAG 1262
|| |||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 1358 GGAGCAAAAGCTTTAAGAAAAAACTCCGGGGAGAGAAATATTACAAGCATCCTAAACTAG 1417
Query 1263 TTCCTCAAAACA-GAAAACTCACTGTTCGTAAAAGCAATGCTTCAGAGATACCGGAGTAT 1321
||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1418 TTCCTCAAA-CAAGAAAACTCACTGTTCGTAAAGGCAATGCTTCAGAGATGCCGGAGTAT 1476
Query 1322 CGAAGAGGATATTCTAAAGAAGGTAAAGACTTTGAGAGGTCAGAAACTTCAGGTCCTGGT 1381
| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1477 CCAAGAGGATATTCTGAAGAAGGTAAAGACTTTGAGAGGTTAGAAACTTCAGGTCCTGGT 1536
Query 1382 CAAG-GTAGAATATTCAACCAGCGGATGCTAACAAAGCGTTC-TCTTTCAAGGCATGGAA 1439
|| | ||||||| |||||||||||||| |||||||| ||| | ||||||||| |||||||
Sbjct 1537 CA-GCGTAGAATTTTCAACCAGCGGATACTAACAAAACGT-CGTCTTTCAAGACATGGAA 1594
Query 1440 AGAAGAATGGGACAGACATTT-GTGA--A----TCTGAGAATTGGAATTCATTGTCAGAA 1492
| |||||||||||| | |||| |||| | ||||| ||| || ||||||||||||||
Sbjct 1595 ATAAGAATGGGACAAA-ATTTTGTGAGCAGCCATCTGAAAATGGGCATTCATTGTCAGAA 1653
Query 1493 GATCCTCTTGTGTTAAGAAGTCCAAGTCATGTGAGTACTGATTTGTCCGAGACAGTTTCT 1552
||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1654 GATCCTCTTGTATCAAGAGGTCCAAGTCATGTGAGTACTGATTTATCCGAGACAGTTTCT 1713
Query 1553 TCTCCTTTAAACAGTATAGGGTCATGGAGAGTTTGTGGGGAGAGCCAAGTTTCTGGAAAG 1612
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1714 TCTCCTTTAAACAGTCTAGGGTCATGGAGAATTTGTGGGGAGAGCCAAGTCTCTGGAAAG 1773
Query 1613 AGCTGGGCTTTGTCTAGGAACAGAAGCATTGAAAGTGATTTATTTGTAGCAAATCCCTTG 1672
||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1774 AGCTGGGCTTTGTCTAGAAACAAAAGCGTTGAAAGTGATTTATTTGTAGCAAATCCCTTG 1833
Query 1673 AGATGTTTAACACCTGTGGCGA-G-AG-----------G-C----G---TCATGAAGTTC 1711
||||||| || |||||||| || | || | | | |||||||||||
Sbjct 1834 AGATGTTCAATACCTGTGGAGAAGGAGTTTTCTTCCAAGGCAAAAGGCGTCATGAAGTTC 1893
Query 1712 AAGAAAGCTCGAATGGATTTCTCTGAGAATGAAGATGAAGATATAGGGAAATGGGAGTCT 1771
|||||||||||| |||||||||| ||| ||| |||||||| ||||||||||||||||
Sbjct 1894 AAGAAAGCTCGATTGGATTTCTC--AGA--GAA--TGAAGATACAGGGAAATGGGAGTCT 1947
Query 1772 GAAATGACTCAAGAACGTGAACT--GTCAGATTATGATGGTTGGGATGATGATGATGGAG 1829
||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||
Sbjct 1948 GAAATGACTCAAGAACGTGAACTAAGT--GATTATGATGATTGGGATGCTGATGATGGAG 2005
Query 1830 AAACAGATAAGGTTGCGCTAAGCTCAAATCCTTCGTTTAGCGGGGAAGACAATGATTATG 1889
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 AAACTGATAAGGTTGTGCTAAGCTCAAATCCTTCGTTTAGCGGGGAAGACAATGATTATG 2065
Query 1890 AAAGCTATGAAGAGACTGGTGATAA---CAAAGGAGGTGATGATATGTTGGACAAAACTA 1946
|||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||
Sbjct 2066 AAAGCTATGAAGAGACTGGTTATAATAACAAAGGAGATGATGCTATGTTGGACAAAACTA 2125
Query 1947 AAGATGCAGATGTTGAGTTTGAAAGCATGGTTTATGAGAAAACTGGTTGCGAAACCGCGG 2006
| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 2126 ATGATGCAGATGTTGAGTTTGAAAGTATGATTTATGAGAAAACTGGTTGCGAAACTGCGG 2185
Query 2007 AACAAGAAAGCTCGTTCATGGAGGTTGATCCCATTCCTATTCCAGGACCTCCGGGATCAT 2066
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 AACAAGAAAGCTCATTCATGGAGGTTGATCCCATTCCTATTCCAGGACCTCCGGGATCAT 2245
Query 2067 TTTTACCAAGTCCTTGGGATATGATGGGAACTGATGCAGTTGAACATCATGGAAACTCTT 2126
||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 2246 TTTTACCAAGTCCTTGGGATATG--GG-AACTGATGCAATTGAACATCATGGAAACTCTT 2302
Query 2127 CAGTTATCACAAGCCAAGTCCACTCTTCACAAGATCAGTTTGATCTCACTGACAGAAATT 2186
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2303 CAGTTATTACAAGCCAAGTCCACTCTTCACAAGATCAGTTTGATCTCACTGACAGAAATT 2362
Query 2187 CATCGGAATCACCTGTTTCAGCAATTTCAAACTTTGCAGCTCCTGAAACACAGACATTAA 2246
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2363 CATCGGAATCACCTGTTTCAGCAATTTCACACTTTGCCGCTCCTGAAACACAGACATTAA 2422
Query 2247 GTCTTCATAACATCATCACCACTGACAAGAGACCTTCCAGATTCAGAGACAATGATCAAT 2306
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2423 GTCTTCATAACATCATAACCACTGACAAGAGACCTTCCAGATTCAGAGACAGTGATCAAT 2482
Query 2307 CATGTTGTTGCCAAAGAAAGGAGAAAGCTCTTGAAGATACAACATTTTGTCAACCACCAC 2366
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2483 CATGTTGTTGCCAAAGAAAGGAGAAAGCTCTTGAAGATACCACATTTTGTCAACCACCAC 2542
Query 2367 CACCACAAATGATCCAACAAGATTTGGATTTCCTGAGTAAGTCTGTGCCTGCGGTTCCTT 2426
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2543 AACG-CA--TGATCCAACAAGATTTGGATTTCCTGAGTAAGTCTGTGCCTGCGATTCCTT 2599
Query 2427 CAACTCCCAACCCGGTGTTGCGGCTGATGGGAAAGGATTTGATGGTTATTAACCAAAGAG 2486
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2600 CAAATCCCAACCCGGTGTTGCGGCTTATGGGAAAGGATTTGATGGTTATTAACCAAAGAG 2659
Query 2487 AAGAGCCTTCACACAACGAATCAAGTCCAAAACCAACCTCTCAGTTTCTAGATCTTTCTA 2546
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2660 AAGAGCCTTCACACGACGAATCAAGTCCAAAACCAACCTCTCAGTTTCTAGATCTGTCTA 2719
Query 2547 AGACACAGCAAGCGTCTCCTTCTGTTAATCTTCTTCATCCTCCTTACAGCGGAAATGGTT 2606
||||||| |||||||||||| ||||||||| |||||||| ||||||||| || | ||||
Sbjct 2720 AGACACAACAAGCGTCTCCTGCTGTTAATCATCTTCATCGTCCTTACAGTGGGAGCGGTT 2779
Query 2607 ATTTCGACACCAATACAAGCTTCTACAACATCCCATGAAAGTTCAGACCAAGAACTCTAC 2666
|||||||||||| ||||| ||||||||||| |||||||| |||||| ||||||||||||
Sbjct 2780 ATTTCGACACCAGCACAAGGTTCTACAACATTCCATGAAAATTCAGATCAAGAACTCTAC 2839
Query 2667 -TTCTCTCCAAGATACTAAATAATATTCCATGGCATTTCAGATCAAAGTCCAGGCATTTT 2725
|| ||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 2840 GTT-TCTCCAAGATATTA--TA-TATTCCATGGCATTTCAGATCAAAGTCCAGGCATTTT 2895
Query 2726 CCTTAAGCTTGAGA-TCTTGAGAAGCTAGACACCTCAAGATCTCATGTTTCTCTATAATA 2784
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct 2896 CCTTAAGCTTGAGAATCTTGAGAAGCTAGGCACCTCAAGCTCTCATGTTTCTCTTTGATA 2955
Query 2785 AAGAGGTTGAGAATCTCAAAAAGGCTGCTTTAGAAAGACAATGGTGAGACTGAGATAAAT 2844
||||||||||||||| |||| |||||||||||||| || |||||||||| | |||| | |
Sbjct 2956 AAGAGGTTGAGAATCACAAAGAGGCTGCTTTAGAA-GA-AATGGTGAGA-T-AGATTA-T 3010
Query 2845 TCTCTCCTCATAGGATGATATATATGAGAACTCCACTAAGGTAAAAGGACCCC 2897
||| | |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 3011 -CTC-C-TCATAGGATGATATG-A-GAGAACTCCACTAAGGTAAAAGGACCCC 3058
> Ahg495713 jgi|Araly1|495713|fgenesh2_kg.8__1529__AT5G56240.1
Length=3496
Score = 230 bits (124), Expect = 6e-59
Identities = 252/311 (81%), Gaps = 20/311 (6%)
Strand=Plus/Plus
Query 714 CTTCTGATTC--T-ATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTT 770
||||||| || | ||||||| | ||| ||||| || |||||||||||||| || ||||
Sbjct 819 CTTCTGAATCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTCTCCTCAGCTT 878
Query 771 CTAACACTACTTTAAATGCGCACATTGATCAGTGTCTGTCTGTTGACTC-G---GGGCAG 826
||||||| ||||| ||||| ||||| || |||||| ||||||||||||| | | ||
Sbjct 879 CTAACACAACTTTGAATGCTCACATCGACCAGTGTTTGTCTGTTGACTCAGCACTGCCAC 938
Query 827 CAGCCG--ATTCGTAAGCCAAACAGGCCTAAG-ACTAAGCCACGGTTGAAAGTTAAAACC 883
| | | | | |||||||||||| |||| || | |||||||||| |||||||||||||
Sbjct 939 CGGTTGTTAGTAGTAAGCCAAACAAGCCT-AGAAGTAAGCCACGGGTGAAAGTTAAAACG 997
Query 884 ATGACTGATATCTATGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 943
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 ATGGTTGATATCTACGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 1057
Query 944 GGCACAAAGTGGGCTAT-GATTTCGAGCTACT-CTAACCGTGTTGTCT-CTGATGATAAG 1000
|| |||||||||| | | ||||| ||| || | | || | ||||| | |||| || | |
Sbjct 1058 GGAACAAAGTGGG-TGTCGATTTTGAGTTA-TACAAATAGAGTTGT-TGCTGA-GA-A-G 1111
Query 1001 CCTGAAGTGTC 1011
||||||||||
Sbjct 1112 TCTGAAGTGTC 1122
> Ahg333231 jgi|Araly1|333231|fgenesh1_pm.C_scaffold_191000002
Length=2952
Score = 230 bits (124), Expect = 6e-59
Identities = 252/311 (81%), Gaps = 20/311 (6%)
Strand=Plus/Plus
Query 714 CTTCTGATTC--T-ATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTT 770
||||||| || | ||||||| | ||| ||||| || |||||||||||||| || ||||
Sbjct 557 CTTCTGAATCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTCTCCTCAGCTT 616
Query 771 CTAACACTACTTTAAATGCGCACATTGATCAGTGTCTGTCTGTTGACTC-G---GGGCAG 826
||||||| ||||| ||||| ||||| || |||||| ||||||||||||| | | ||
Sbjct 617 CTAACACAACTTTGAATGCTCACATCGACCAGTGTTTGTCTGTTGACTCAGCACTGCCAC 676
Query 827 CAGCCG--ATTCGTAAGCCAAACAGGCCTAAG-ACTAAGCCACGGTTGAAAGTTAAAACC 883
| | | | | |||||||||||| |||| || | |||||||||| |||||||||||||
Sbjct 677 CGGTTGTTAGTAGTAAGCCAAACAAGCCT-AGAAGTAAGCCACGGGTGAAAGTTAAAACG 735
Query 884 ATGACTGATATCTATGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 943
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 ATGGTTGATATCTACGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 795
Query 944 GGCACAAAGTGGGCTAT-GATTTCGAGCTACT-CTAACCGTGTTGTCT-CTGATGATAAG 1000
|| |||||||||| | | ||||| ||| || | | || | ||||| | |||| || | |
Sbjct 796 GGAACAAAGTGGG-TGTCGATTTTGAGTTA-TACAAATAGAGTTGT-TGCTGA-GA-A-G 849
Query 1001 CCTGAAGTGTC 1011
||||||||||
Sbjct 850 TCTGAAGTGTC 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112709034955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5