BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56270.1
Length=2798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950284 jgi|Araly1|950284|scaffold_802171.1 3267 0.0
Ahg329038 jgi|Araly1|329038|fgenesh1_pm.C_scaffold_7001265 248 2e-64
> Ahg950284 jgi|Araly1|950284|scaffold_802171.1
Length=2101
Score = 3267 bits (1769), Expect = 0.0
Identities = 1993/2101 (95%), Gaps = 15/2101 (1%)
Strand=Plus/Plus
Query 586 CAAATTCTTGGATACTAAATGGCTGGTTTTGATGAAAATGTTGCTGTGATGGGAGAATGG 645
||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3 CAAATTCTTTGATCCTAAATGGCTGGTTTTGATGAAAATGTTGCTGTAATGGGAGAATGG 62
Query 646 GTGCCTCGTAGTCCTAGTCCCGGGACACTTTTCTCCTCTGCTATTGGAGAAGAGAAGAGC 705
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 63 GTGCCTCGTAGTCCTAGTCCCGGGACTCTTTTCTCCTCAGCGATTGGAGAAGAGAAGAGC 122
Query 706 TCGAAACGTGTTCTTGAAAGAGAGTTATCTTTGAATCATGGTCAAGTTATTGGTTTAGAA 765
||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 123 TCGAAACGTGTACTCGAAAGAGAGCTATCTTTGAATCATGGGCAAGTTATTGGTTTAGAA 182
Query 766 GAAGACACTAGTAGTAATCATAACAAGGATTCTTCACAAAGCAATGTTTTTCGAGGTGGT 825
|||||| ||| | ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 183 GAAGACTCTACTGGTAATCATAACAAGGATTCTTCACAAACCAACGTTTTTCGAGGTGGT 242
Query 826 CTCAGTGAAAGAATTGCTGCAAGAGCTGGATTTAATGCTCCAAGGTTGAACACTGAGAAT 885
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 243 CTCAGCGAAAGAATTGCTGCAAGAGCTGGATTTAATGCTCCGAGGTTAAACACTGAGAAT 302
Query 886 ATCCGCACCAACACCGACTTTTCCATTGACTCTAACCTTCGATCTCCTTGCTTAACCATC 945
||||| | |||| ||||||| |||||||||| | ||||| ||||||||||||||||||
Sbjct 303 ATCCGTTCTAACAACGACTTTACCATTGACTCGAGTCTTCGGTCTCCTTGCTTAACCATC 362
Query 946 TCTTCTCCTGGCCTTAGCCCTGCAACACTCTTGGAATCTCCTGTTTTCCTTTCTAACCCA 1005
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 363 TCTTCTCCTGGCCTTAGCCCTGCGACACTCTTGGAATCTCCTGTTTTCCTTTCTAACCCA 422
Query 1006 TTGGCTCAACCTTCTCCAACTACCGGGAAATTTCCATTTCTTCCTGGTGTTAATGGTAAT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 423 TTGGCTCAACCTTCTCCAACTACCGGGAAATTTCCATTTCTTCCTGGTGTTAACGGTAAT 482
Query 1066 GCATTGTCTTCTGAGAAAGCGAAAGACGAGTTCTTTGATGATATTGGAGCATCATTCAGC 1125
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 483 GCATTGTCTTCTGATAAAGCGAAAGACGAGTTCTTTGATGATATTGGAGCATCTTTCACC 542
Query 1126 TTCCATCCTGTTTCAAGATCATCTTCCTCTTTCTTCCAAGGCACAACAGAGATGATGTCA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TTCCATCCTGTTTCAAGATCATCTTCCTCTTTCTTCCAAGGCACAACAGAGATGATGTCA 602
Query 1186 GTTGATTATGGTAACTACAACAATAGATCTTCTTCTCATCAATCCGCAGAAGAAGTAAAA 1245
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 603 GTTGATTATGGTAACTACAACAGTAGATCTTCTTCTCATCAATCCGCAGAAGATGTAAAA 662
Query 1246 CCTGGCTCTGAAAACATAGAAAGCTCCAATCTTTATGGGATTGAAACTGACAATCAAAAC 1305
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CCCGGCTCTCAAAACATAGAAAGCTCCAATCTTTATGGGATTGAAACTGACAATCAAAAT 722
Query 1306 GGGCAGAACAAGACATCTGATGTCACTACAAACACCAGTCTTGAAACCGTGGATCATCAA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GGGCAGAACAAGACATCTGATGTCACTACAAACACCAGTCTTGAAACCGTGGATCATCAA 782
Query 1366 GAGGAAGAAGAAGAGCAAAGACGCGGTGATTCGATGGCTGGTGGTGCGCCTGCAGAGGAT 1425
||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 783 GAGGAAGAAGAAGAGCAAAGACGTGGTGATTCAATGGTTGGTGGTGCGCCTGCAGAGGAT 842
Query 1426 GGATATAACTGGAGGAAATACGGACAAAAGTTGGTCAAAGGAAGTGAGTATCCGCGAAGC 1485
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 843 GGATATAACTGGAGGAAATACGGACAAAAGTTAGTTAAAGGAAGTGAGTACCCGCGAAGC 902
Query 1486 TATTACAAGTGCACAAACCCGAATTGTCAGGTGAAGAAGAAAGTTGAGAGATCAAGGGAA 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TATTACAAGTGCACAAACCCGAATTGTCAGGTGAAGAAGAAAGTTGAGAGATCAAGGGAA 962
Query 1546 GGTCACATCACAGAGATTATATACAAAGGAGCTCATAATCA-TCTTAAACCTCCACCTAA 1604
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 963 GGTCACATCACAGAGATTATATACAAAGGAGCTCATAATCACTCT-AAACCTCCACCGAA 1021
Query 1605 TCGCCGCTCAGGGATGCAAGTAGATGGAACTGAACAAGTTGAACAACAA---CAACAACA 1661
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1022 TCGCCGCTCAGGGATGCAAGTAGATGGAACTGAACAAGTTGAACAACAAAAACAACAACA 1081
Query 1662 GAGAGATTCTGCTGCAACGTGGGTTAGTTGTAATAACACTCAACAACAAGGTGGAAGCAA 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GAGAGATTCTGCTGCAACGTGGGTTAGTTGTAATAACACTCAACAACAAGGTGGAAGCAA 1141
Query 1722 TGAGAACAATGTCGAAGAGGGATCTACGAGATTCGAGTATGGAAACCAATCTGGATCAAT 1781
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct 1142 TGAGAACAATGTCGAAGAGGGATCTACGGGATTCGAATATGGAAACCAATCTGGATCGAT 1201
Query 1782 TCAAGCTCAAACCGGAGGTCAATACGAGTCAGGTGATCCTGTGGTTGTGGTTGATGCTTC 1841
||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 1202 TCAAGCTCAAAATGGAGGTCAATACAAGTCAGGCGATGCTGTGGTTGTGGTTGATGCTTC 1261
Query 1842 TTCAACATTCTCTAATGATGAAGATGAAGATGATCGAGGGACACATGGAAGTGTTTCTTT 1901
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1262 ATCGACATTCTCTAACGATGAAGATGAAGATGATCGAGGGACACATGGAAGTGTTTCTAT 1321
Query 1902 GGGTTACGATggaggaggaggaggtgggggaggagaaggagATGAATCAGAGTCGAAAAG 1961
|||||| ||||||||||| || | |||||||||||||||||||||||| ||||| |||||
Sbjct 1322 GGGTTATGATGGAGGAGG-GG-G-TGGGGGAGGAGAAGGAGATGAATCCGAGTCAAAAAG 1378
Query 1962 AAGGAAACTAGAAGCTTTTGCAGCAGAGATGAGTGGATCAACAAGAGCCATACGTGAGCC 2021
||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 1379 AAGGAAACTAGAAGCTTATGCAGCAGAGATGAGTGGAGCAACAAGAGCCGTACGTGAACC 1438
Query 2022 AAGAGTTGTTGTGCAGACAACGAGTGATGTTGACATTCTTGATGATGGTTATCGCTGGCG 2081
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1439 AAGAGTTGTTGTGCAAACAACGAGTGATGTTGACATTCTTGATGATGGCTATCGCTGGCG 1498
Query 2082 AAAATATGGTCAGAAAGTTGTCAAAGGCAATCCAAATCCAAGGAGTTATTACAAATGCAC 2141
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1499 GAAATATGGTCAGAAAGTTGTCAAAGGAAATCCAAATCCCAGGAGTTATTACAAATGCAC 1558
Query 2142 AGCTCCAGGA-TGTACAGTGAGGAAACATGTTGAAAGAGCTTCTCATGATCTCAAATCCG 2200
|||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGCTCCTG-ACTGTACAGTGAGAAAACATGTTGAAAGAGCTTCTCATGATCTCAAATCCG 1617
Query 2201 TTATAACAACTTACGAAGGCAAACATAACCATGACGTCCCCGCTGCACGCAACAGCAGCC 2260
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1618 TTATAACAACTTACGAAGGCAAACATATCCATGATGTCCCCGCTGCACGCAACAGCAGCC 1677
Query 2261 ACGGAGGCGGTGGTGATAGTGGTAACGGTAACAGCGGCGGTTCAGCCGCAGTTTCTCACC 2320
||||||||||||| | | |||||| ||||||| ||||||||||| || ||||||||||
Sbjct 1678 ACGGAGGCGGTGGC-A--GCGGTAACAGTAACAGTGGCGGTTCAGCTGCTGTTTCTCACC 1734
Query 2321 ATTACCACAACGGTCATCACTCAGAGCCGCCACGTGGGAGATTCGACAGACAAGTCACAA 2380
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1735 ATTACCACAACGGTCATCACACAGAGCCGCCGCGTGGGAGATTCGACAGACAAGTCACAA 1794
Query 2381 CTAAC-AATCAGTCTCCTTTTAGCCGTCCCTTTAGCTTTCAGCCACATTTGGGTCCTCCT 2439
| | | ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 1795 CGA-CTAATCAGTCTCCTTTTGGACGTCCGTTTAGCTTTCAGCCACATTTGGGTCCTCCT 1853
Query 2440 TCTGGTTTCTCCTTCGGTTTAGGACAAACCGGTTTGGTTAATCTTTCAATGCCTGGTTTA 2499
|| |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1854 TCGGGTTTCTCGTTCGGTTTAGGACAAGCCGGTTTGGCTAATCTTTCAATGCCTGGTTTA 1913
Query 2500 GCGTATGGTCAAGGGAAAATGCCGGGTTTGCCTCACCCGTATATGACACAACCGGTTGGG 2559
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1914 GCGTATGGTCAAGGGAAAATGCCGGGTTTGCCTCACCCGTATTTGACACAACCGGTTGGG 1973
Query 2560 ATGAGTGAAGCAATGATGCAGAGAGGGATGGAACCAAAGGTTGAACCGGTTTCAGATTCA 2619
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1974 ATGAGTGAAGCAATGATGCAGAGAGGGATGGAACCAAAGGTCGAACCGGTTTCGGATTCA 2033
Query 2620 GGACAATCGGTATATAACCAGATCATGAGTAGATTACCTCAGATTTGAAATTTACtcttc 2679
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 2034 GGACAATCGGTATATAACCAGATCATGAGTAGATTACCTCAGATTTGAATTTTACTATTC 2093
Query 2680 t 2680
|
Sbjct 2094 T 2094
> Ahg329038 jgi|Araly1|329038|fgenesh1_pm.C_scaffold_7001265
Length=1707
Score = 248 bits (134), Expect = 2e-64
Identities = 195/225 (87%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 1396 TCGATGGCTGGTGGTGCGCCTGCAGAGGATGGATATAACTGGAGGAAATACGGACAAAAG 1455
||||| ||| ||||||| |||||||| |||||||| |||||||| ||||| ||||| |||
Sbjct 514 TCGATTGCTAGTGGTGCACCTGCAGATGATGGATACAACTGGAGAAAATATGGACAGAAG 573
Query 1456 TTGGTCAAAGGAAGTGAGTATCCGCGAAGCTATTACAAGTGCACAAACCCGAATTGTCAG 1515
| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 574 CTAGTTAAAGGAAGTGAGTATCCGCGGAGCTATTACAAGTGCACGCACCCGAATTGTGAG 633
Query 1516 GTGAAGAAGAAAGTTGAGA-GATCAAGGGAAGGTCACATCACAGAGATTATATACAAAGG 1574
|| |||||||| ||||| | | || |||||||||| || | |||||| ||||||| |||
Sbjct 634 GTCAAGAAGAAGGTTGA-ACGGTCTCGGGAAGGTCATATTATAGAGATCATATACACAGG 692
Query 1575 AGCTCATAATCATCTTAAACCTCCACCTAATCGCCGCTCAGGGAT 1619
|||||||||||| | |||||||||||||||||||||||||||||
Sbjct 693 AGCTCATAATCACCCCAAACCTCCACCTAATCGCCGCTCAGGGAT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105586159140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5