BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56280.1
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495718 jgi|Araly1|495718|fgenesh2_kg.8__1534__AT5G56280.1 1740 0.0
Ahg492170 jgi|Araly1|492170|fgenesh2_kg.7__1603__AT4G26430.1 948 0.0
> Ahg495718 jgi|Araly1|495718|fgenesh2_kg.8__1534__AT5G56280.1
Length=1145
Score = 1740 bits (942), Expect = 0.0
Identities = 1079/1142 (94%), Gaps = 22/1142 (2%)
Strand=Plus/Plus
Query 15 CAAAGAATTCATCAAAG-GAGAGAGAGATCGACAATGGCACCTTCGTCATCAAGCGGTTT 73
||||||||||||| ||| | |||||||| | |||||||||||||||||||||||||||||
Sbjct 1 CAAAGAATTCATCGAAGAGCGAGAGAGA-CAACAATGGCACCTTCGTCATCAAGCGGTTT 59
Query 74 AACCTTCAAGCTACATCCTTTGGTAATCGTCAACATATCGGATCACTACACTAGGGTCAA 133
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 60 AACCTTCAAGTTACATCCTTTGGTAATCGTAAACATATCGGACCACTACACTAGGGTCAA 119
Query 134 AACTCAGCTCAATCCTCCTGCTTCAATCTGCGCAAGCGGCCATGGCTCAAACAACGGCGA 193
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 AACTCAGCTCAATCCTCCTGCTTCAATCTGCGCAAGCGGGCATGGCTCAAACAACGGCGA 179
Query 194 AGCAATGTTCCAGCAAAACCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCG 253
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCAGTGATCCAGCAAAACCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCG 239
Query 254 TACTGTTGAGATATTCAACAGTTTCGAGCTTTTATATGATCCTTCTACTCAAACCCTTGA 313
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TACTGTTGAGATCTTCAACAGTTTCGAGCTTTTATATGATCCTTCGACTCAAACCCTTGA 299
Query 314 TAGATCTTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCTGATTTCTATAT 373
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TAGAGCTTTCCTCGAGAAGAAGCAAGAGCTATATAAGAAGGTGTTCCCTGATTTCTATAT 359
Query 374 TCTGGGATGGTACTCTACGGGAAGTGATGCTGAGGAATCTGATATGCATATCCATAAAGC 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTGGGATGGTACTCTACGGGAAGTGATGCTGAGGAATCTGATATGCATATCCATAAAGC 419
Query 434 TTTGATGGATATCAATGAATCTCCTGTTTATGTGCTTTTAAACCCTGCTATCAATCACAC 493
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 420 TTTGATGGATATCAATGAATCTCCTGTTTATGTGCTTTTAAACCCTGCAATCAATCACGC 479
Query 494 ACAGAAGGATCTTCCAGTGACTATTTATGAAAGTGAATTGCATGTCATTGATGGAATCCC 553
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 ACAGAAGGATCTTCCAGTGACTATCTATGAAAGTGAATTGCATGTCATTGATGGAATCCC 539
Query 554 GCAGCTAATTTTCGCTCATACAAGCTACACAATCGAGACAGTTGAAGCTGAACGGATATC 613
|||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GCAGCTGATTTTCGTTCATACAAGCTACACAATCGAGACCGTTGAAGCTGAACGGATATC 599
Query 614 AGTTGATCATGTTGCACATCTTAAACCATCTGACGGAGGCTCAGCAGCAACCCAGTTGGC 673
||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 600 AGTCGATCATGTTGCACATCTCCAACCATCTGATGGAGGCTCTGCAGCAACCCAGTTGGC 659
Query 674 TGCTCATCTTACTGGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCT 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCTCATCTTACTGGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCT 719
Query 734 TTACCAAAATCTTGCTGCAATGCAGAAAGGTGATAAATC-TTGTGACAACTCAGTTCTGA 792
|||||| ||||||||||||||||||||| ||||| || ||||||||||||| ||||||
Sbjct 720 CTACCAATATCTTGCTGCAATGCAGAAAGATGATAT-TCCTTGTGACAACTCACTTCTGA 778
Query 793 GACAAGTATCTAGCCTGCTAAGAAGATTGCCTGCCATGGAATCAGAGAGATTTCAAGATA 852
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 GACAAGTATCTAGCCTGCTAAGAAGATTGCCTGCCATGGAATCAGAAAGATTTCAAGATA 838
Query 853 ATTTCTTGATGGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTTCTTGATGGAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATT 898
Query 913 GTTCCAGCAACATGAACGAGATGGTCGACAAATTCAACACCGCATATGACAGAAACACTC 972
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 GTTCCAGCAACATGAACGAGATGGTCGACAAATTCAACACCGCGTATGACAGAAACACTC 958
Query 973 GAAGAGGTGGAAGAACTGCATTCATGTAAAAGATCCTTTCCAGCGATTCTA-GTTCTAAA 1031
|||||||||| ||||||||||||||||||||||| || || ||| ||| || ||||||||
Sbjct 959 GAAGAGGTGGTAGAACTGCATTCATGTAAAAGATTCTCTCTAGCAATT-TAAGTTCTAAA 1017
Query 1032 -GATCTTCTCTTGGTTCCTGAAACCATTTTTAACATTGCCTCTGTGAGAATCTATAACTC 1090
|||||||||||||||||||||||||||||| | ||| ||||||||||||| |
Sbjct 1018 AGATCTTCTCTTGGTTCCTGAAACCATTTTTGTCTTTGTCTCTGTGAGAATC-----C-- 1070
Query 1091 AGACGGCAAGACTTTATCCTCTTCATTGTTTCTATATCTATAAGAA-CATCTGCTTATCT 1149
|| | |||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 1071 -GA----A-GACTTTATCCTCTTCATTGTTTCTATATATATAAGAAACATCTGCTT-TCT 1123
Query 1150 AT 1151
||
Sbjct 1124 AT 1125
> Ahg492170 jgi|Araly1|492170|fgenesh2_kg.7__1603__AT4G26430.1
Length=1379
Score = 948 bits (513), Expect = 0.0
Identities = 814/958 (85%), Gaps = 25/958 (3%)
Strand=Plus/Plus
Query 34 GAGAGAGATCGACAATGGCACCTTCGTCATCAAGCGGTTTAACCTTCAAGCTACATCCTT 93
||||| || | |||||||| ||||| || || |||||| | || |||||||||||||||
Sbjct 144 GAGAGCGA-CAACAATGGCGCCTTCTTCGTCGAGCGGTCTCACGTTCAAGCTACATCCTC 202
Query 94 TGGTAATCG-TCAACATATCGGATCACTACACTAGGGTCAAAACTCAGCTCAATCCTCCT 152
|||| || | | |||||||| ||||||| ||||||||| ||||||||||| | ||||||
Sbjct 203 TGGTGAT-GCTTAACATATCCGATCACTTCACTAGGGTTAAAACTCAGCTTAGTCCTCCC 261
Query 153 GCTTCAATC-TGCGCAAGCGGCCATGGCTCAAACAACGGCGAAGCAATGTTCCAGCAAAA 211
|| | || ||||| | ||| ||||||| | ||||| ||| || | | ||| ||||||
Sbjct 262 GCCGC-TTCTTGCGCCACCGGGAATGGCTCCAGCAACGCCGACGCGACGGTCCTGCAAAA 320
Query 212 CCCTAGGGTTTACGGATGTGTGATCGGTGTCCAGAGAGGTCGTACTGTTGAGATATTCAA 271
|||||||||||| || || ||||||||| |||||||||||||||| |||||||| |||||
Sbjct 321 CCCTAGGGTTTATGGCTGCGTGATCGGTCTCCAGAGAGGTCGTACGGTTGAGATCTTCAA 380
Query 272 CAGTTTCGAGCT-TTTATATGATCCTTCTACTCAAACCCTTGATAGATCTTTCCTCGAGA 330
|||||||||||| || || |||||| ||||| | || || || ||||| ||||||||||
Sbjct 381 CAGTTTCGAGCTATTGAT-CGATCCTACTACTGATACTCTCGACAGATCCTTCCTCGAGA 439
Query 331 AGAAGCAAGAGCTCTATAAGAAGGTGTTCCCTGATTTCTATAT-TCTGGGATGGTACTCT 389
|||||||||| ||||| ||||||||||||||||| ||||| || | |||||||||| ||
Sbjct 440 AGAAGCAAGAACTCTACAAGAAGGTGTTCCCTGACTTCTACATAT-TGGGATGGTATTCG 498
Query 390 ACGGGAAGTGATGCTGA-GGAATCTGATATGCATATCCATAAAGCTTTGATGGATATCAA 448
|||||||| || ||| | ||||||||||||||||||||| |||||| ||||||| || ||
Sbjct 499 ACGGGAAGCGACGCT-ACGGAATCTGATATGCATATCCACAAAGCTCTGATGGACATTAA 557
Query 449 TGAATCTCCTGTTTATGTGCTTTTAAACCCTGCTATCAATCACACACAGAAGGATCTTCC 508
|||||||||||| ||||| ||| |||| |||||||||||||| ||||||||||||||||
Sbjct 558 TGAATCTCCTGTGTATGTTCTTCTAAATCCTGCTATCAATCATGCACAGAAGGATCTTCC 617
Query 509 AGTGACTATTTATGAAAGTGAATTGCATGTCATTGATGGAATCCCGCAGCT-AATTTTCG 567
||||||||| || ||||| ||||| ||||||||||||||| | || ||| | |||||||
Sbjct 618 AGTGACTATCTACGAAAGCGAATTCCATGTCATTGATGGAGTTCCTCAG-TCGATTTTCG 676
Query 568 CT-CATACAAGCTACACAATCGAGACAGTTGAAGCTGAACGGATATCAGTTGATCATGTT 626
| |||||||||||||| || |||||||||||||||||| | ||||| ||||||||||||
Sbjct 677 -TGCATACAAGCTACACTATTGAGACAGTTGAAGCTGAAAGAATATCGGTTGATCATGTT 735
Query 627 GCACATCTTAAACCATCTGACGGAGGCTCAGCAGCAACCCAGTTGGCTGCTCATCTTACT 686
|||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 736 GCACATCTCAAGCCATCTGATGGAGGCTCAGCAGCGACCCAATTGGCTGCTCATCTTACT 795
Query 687 GGTATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTTTACCAAAATCTT 746
|| |||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct 796 GGAATACATAGTGCCATCAAGATGCTTAATAGCAGAATCAGAGTGCTCTATCAGTATATT 855
Query 747 G-CTGCAATGCAGAAAGGTGATAAATC-TTGTGACAACTCAGTTCTGAGACAAGTATCTA 804
| | || |||||||||||||||| || ||| |||||| || || | ||||||||||||
Sbjct 856 GTC-GCTATGCAGAAAGGTGATAT-TCCTTGCGACAACGCACTTTTTCGACAAGTATCTA 913
Query 805 GCCTGCTAAGAAGATTGCCTGCCATGGAATCAGAGA-GATTTCAAGATAATTTCTTGATG 863
| ||||| ||||| ||||||||| ||||| |||| | ||||| || ||||||||||||
Sbjct 914 GTCTGCTCAGAAGTTTGCCTGCCGCAGAATCTGAGAAG-TTTCATGAAAATTTCTTGATG 972
Query 864 GAGTACAACGACAAATTACTAATAACTTACCTAGCGATGATTACAAATTGTTCCAGCAAC 923
||||||||||||||||| || || |||||||||| ||||| || |||||| ||||||||
Sbjct 973 GAGTACAACGACAAATTGCTGATGTCTTACCTAGCAATGATCACGAATTGTACCAGCAAC 1032
Query 924 ATGAACGAGATGGTCGACAAATTCAACACCGCATATGACAGAA-ACA-CTCGAAGAGG 979
||||||||| |||| |||||||||||||| ||||| |||| || ||| | ||||||||
Sbjct 1033 ATGAACGAGGTGGTTGACAAATTCAACACTGCATACGACA-AACACAGC-CGAAGAGG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5