BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56300.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950287 jgi|Araly1|950287|scaffold_802174.1 1897 0.0
> Ahg950287 jgi|Araly1|950287|scaffold_802174.1
Length=1209
Score = 1897 bits (1027), Expect = 0.0
Identities = 1152/1212 (95%), Gaps = 10/1212 (1%)
Strand=Plus/Plus
Query 43 AGAGAGAAGAGACAGAGCATTAATGGAGTCACCAAGCCTTCCGATGACGGCCAAAGACTG 102
|||||||||||| ||| || |||||||||| |||||||| || |||||||| ||||||||
Sbjct 1 AGAGAGAAGAGATAGAACACTAATGGAGTCCCCAAGCCTACCAATGACGGCAAAAGACTG 60
Query 103 GACCACCACCAGTCTCCACCGTGTCTTCGCCATGCAAGGCGGCGAAGATGACCTCAGCTA 162
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 61 GACCACCACCAGTCTCCACCGTGTATTCGCTATGCAAGGCGGCGAAGATGACCTCAGCTA 120
Query 163 CGTCAACAATTCCGATAGCCAAGCTTTGGCTATAACCTTAAGCAAACCAATCCTTATCTC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTCAACAATTCCGATAGCCAAGCTTTGGCTATAACCTTAAGCAAACCAATCCTTATCTC 180
Query 223 ATCTCTCCAATCCATCAAACTCTTCTCCGACCAAA---CTCCCATCAAAATCACCGATCT 279
| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||
Sbjct 181 AACTCTCGAATCCATCAAACTCTTCTCCGACCAAACTTCTCCCATCAGAATCACCGACCT 240
Query 280 CGGCTGCGCCACCGGCTCCAACACGTTTACTACCGTTGATACGGTGGTTGAGACGTTACA 339
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 CGGCTGCGCCACCGGCGCCAACACGTTTACAACAGTTGATACGGTGGTTGAGACGTTACA 300
Query 340 ACGGCGATACACTGCCAGGTG--CGGTGGTGGTGGGTCGCCGGAGTTTGAGGCTTTCTTC 397
|||||||||||| | | |||| |||||||||||| |||||||||||||||||||||||
Sbjct 301 ACGGCGATACAC-GGC-GGTGTACGGTGGTGGTGGCTCGCCGGAGTTTGAGGCTTTCTTT 358
Query 398 TGTGATTTGCCTTCTAATGACTTCAACATGTTGTTCAAGTTGTTGGCTGAGAAACAGAAA 457
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 359 TGTGATTTGCCTTCTAATGACTTCAACATGTTGTTCAAGTTGTTGGCTCAAAAACAGAAA 418
Query 458 GTTGACTCGCCGGCGAAATACTTCGCTGGCGGCGTTGCTGGTTCGTTCTATGACCGGCTT 517
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 419 GTTGATTCGCCCGCGAAATACTTCGCTGGGGGCGTTGCTGGTTCGTTCTATGACAGGC-T 477
Query 518 TTTCCC-AGAGGAACGATTCATGTCGCTGTGAGCTTAAGTGCCTTGCACTGGCTCTCTCA 576
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 TTTCCCGAGAGGAACGATTCATGTCGCTGTTAGCTTAAGTGCCTTGCACTGGCTCTCTCA 537
Query 577 GATACCGGAGAAAGTATTGGAGAAAGAATCAAGAACGTGGAACAAAGGGAAAACGTGGAT 636
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 538 GATACCGGAGAAAGTATTGGAGAAAGGATCGAGAACGTGGAACAAAGGGAAAACGTGGAT 597
Query 637 AGAAGGAGCAAAGAAAGAAGTAGTAGAAGCATACGCAGAGCAATCAGACAAAGATTTGGA 696
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 598 AGAAGGAGCAAAGAAAGAAGTAGTGGAAGCATACGCAGAGCAATCAGACAAAGATTTGGA 657
Query 697 TGATTTCATGAGCTGTAGGAAAGAAGAAATGGTGAAAGGAGGAGTGTTGTTTGTGTTGAT 756
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGATTTCATGAGCTGTCGGAAAGAAGAAATGGTGAAAGGAGGAGTGTTGTTTGTGTTGAT 717
Query 757 GGCTGGGCGTCCTTCAGGCTCAAGTAGTCAATTTGGGGACCAAGATACTCGAGCCAAACA 816
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGCTGGTCGTCCTTCTGGCTCAAGTAGTCAATTTGGGGACCAAGATACTCGAGCCAAACA 777
Query 817 TCCTTTCACAACTACCATGGAACAAGCTTGGCAAGATTTAATAGAAGAGGGTTTGATAGA 876
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 TCCTTTCACAACTACCATGGAACAAGCTTGGCAAGATTTAATAGATGAGGGTTTGATAGA 837
Query 877 TGAAGAAACAAGAGACGGTTTCAATATTCCGGCGTACATGAGAAGTCCGGAGGAAGTGAC 936
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 838 TGAAGAGACAAGAGACGGTTTCAACATTCCGGCGTACATGAGAAGTCCGGAGGAAGTGGC 897
Query 937 GGCCGGAATTGACCGTTGTGGTGGTTTCAAGATAGGGAAAATGGACTTCCTGAAAATAGT 996
|||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||
Sbjct 898 GGCCGGAATTGACCGTTGCGGTGGTTTCAAGATAGAGAAAATGGAATTTATGAAAATAGT 957
Query 997 TGAATATTCAGATGAGAAACAAGAAGAGTGGAAGAAAGATCCGGTTTCATATGGACGAGC 1056
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 958 TGAATATTCAGATGAGAAACAAGAAGAGTGGAAGAAAGATCCGGTTTCTTACGGACGAGC 1017
Query 1057 CAGGACCAATTTGGTTCAAGCTGCTATTCGTCCTATGGTTGATGCTTATCTTGGACCAGA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAGGACCAATTTGGTTCAAGCTGCTATTCGTCCTATGGTTGATGCTTATCTTGGACCAGA 1077
Query 1117 CCTATCTCATGAGCTCTTCAAAAGATATGAAAATCGTGTTTCTACAAACCAAGAATTTCT 1176
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ACTATCCCATGAGCTCTTCAAAAGATATGAAAATCGTGTTTCTACAAACCAAGAATTTCT 1137
Query 1177 CCATATAACTTGTTTTTATGGAGTCGTCGTGTTTTCCGCCATCCGAGTTTAATGTTGATA 1236
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1138 CCATATAACTTGTTTTTATGGAGTCGTCGTGTTTTCCGCCATCCGAATTTGATGATGATA 1197
Query 1237 TAATT-TAGCTA 1247
|| || || |||
Sbjct 1198 TAGTTATATCTA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5