BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56300.1 Length=1436 Score E Sequences producing significant alignments: (Bits) Value Ahg950287 jgi|Araly1|950287|scaffold_802174.1 1897 0.0 > Ahg950287 jgi|Araly1|950287|scaffold_802174.1 Length=1209 Score = 1897 bits (1027), Expect = 0.0 Identities = 1152/1212 (95%), Gaps = 10/1212 (1%) Strand=Plus/Plus Query 43 AGAGAGAAGAGACAGAGCATTAATGGAGTCACCAAGCCTTCCGATGACGGCCAAAGACTG 102 |||||||||||| ||| || |||||||||| |||||||| || |||||||| |||||||| Sbjct 1 AGAGAGAAGAGATAGAACACTAATGGAGTCCCCAAGCCTACCAATGACGGCAAAAGACTG 60 Query 103 GACCACCACCAGTCTCCACCGTGTCTTCGCCATGCAAGGCGGCGAAGATGACCTCAGCTA 162 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 61 GACCACCACCAGTCTCCACCGTGTATTCGCTATGCAAGGCGGCGAAGATGACCTCAGCTA 120 Query 163 CGTCAACAATTCCGATAGCCAAGCTTTGGCTATAACCTTAAGCAAACCAATCCTTATCTC 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTCAACAATTCCGATAGCCAAGCTTTGGCTATAACCTTAAGCAAACCAATCCTTATCTC 180 Query 223 ATCTCTCCAATCCATCAAACTCTTCTCCGACCAAA---CTCCCATCAAAATCACCGATCT 279 | ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| || Sbjct 181 AACTCTCGAATCCATCAAACTCTTCTCCGACCAAACTTCTCCCATCAGAATCACCGACCT 240 Query 280 CGGCTGCGCCACCGGCTCCAACACGTTTACTACCGTTGATACGGTGGTTGAGACGTTACA 339 |||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| Sbjct 241 CGGCTGCGCCACCGGCGCCAACACGTTTACAACAGTTGATACGGTGGTTGAGACGTTACA 300 Query 340 ACGGCGATACACTGCCAGGTG--CGGTGGTGGTGGGTCGCCGGAGTTTGAGGCTTTCTTC 397 |||||||||||| | | |||| |||||||||||| ||||||||||||||||||||||| Sbjct 301 ACGGCGATACAC-GGC-GGTGTACGGTGGTGGTGGCTCGCCGGAGTTTGAGGCTTTCTTT 358 Query 398 TGTGATTTGCCTTCTAATGACTTCAACATGTTGTTCAAGTTGTTGGCTGAGAAACAGAAA 457 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 359 TGTGATTTGCCTTCTAATGACTTCAACATGTTGTTCAAGTTGTTGGCTCAAAAACAGAAA 418 Query 458 GTTGACTCGCCGGCGAAATACTTCGCTGGCGGCGTTGCTGGTTCGTTCTATGACCGGCTT 517 ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||| | Sbjct 419 GTTGATTCGCCCGCGAAATACTTCGCTGGGGGCGTTGCTGGTTCGTTCTATGACAGGC-T 477 Query 518 TTTCCC-AGAGGAACGATTCATGTCGCTGTGAGCTTAAGTGCCTTGCACTGGCTCTCTCA 576 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 478 TTTCCCGAGAGGAACGATTCATGTCGCTGTTAGCTTAAGTGCCTTGCACTGGCTCTCTCA 537 Query 577 GATACCGGAGAAAGTATTGGAGAAAGAATCAAGAACGTGGAACAAAGGGAAAACGTGGAT 636 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 538 GATACCGGAGAAAGTATTGGAGAAAGGATCGAGAACGTGGAACAAAGGGAAAACGTGGAT 597 Query 637 AGAAGGAGCAAAGAAAGAAGTAGTAGAAGCATACGCAGAGCAATCAGACAAAGATTTGGA 696 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 598 AGAAGGAGCAAAGAAAGAAGTAGTGGAAGCATACGCAGAGCAATCAGACAAAGATTTGGA 657 Query 697 TGATTTCATGAGCTGTAGGAAAGAAGAAATGGTGAAAGGAGGAGTGTTGTTTGTGTTGAT 756 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TGATTTCATGAGCTGTCGGAAAGAAGAAATGGTGAAAGGAGGAGTGTTGTTTGTGTTGAT 717 Query 757 GGCTGGGCGTCCTTCAGGCTCAAGTAGTCAATTTGGGGACCAAGATACTCGAGCCAAACA 816 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GGCTGGTCGTCCTTCTGGCTCAAGTAGTCAATTTGGGGACCAAGATACTCGAGCCAAACA 777 Query 817 TCCTTTCACAACTACCATGGAACAAGCTTGGCAAGATTTAATAGAAGAGGGTTTGATAGA 876 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 778 TCCTTTCACAACTACCATGGAACAAGCTTGGCAAGATTTAATAGATGAGGGTTTGATAGA 837 Query 877 TGAAGAAACAAGAGACGGTTTCAATATTCCGGCGTACATGAGAAGTCCGGAGGAAGTGAC 936 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 838 TGAAGAGACAAGAGACGGTTTCAACATTCCGGCGTACATGAGAAGTCCGGAGGAAGTGGC 897 Query 937 GGCCGGAATTGACCGTTGTGGTGGTTTCAAGATAGGGAAAATGGACTTCCTGAAAATAGT 996 |||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||| Sbjct 898 GGCCGGAATTGACCGTTGCGGTGGTTTCAAGATAGAGAAAATGGAATTTATGAAAATAGT 957 Query 997 TGAATATTCAGATGAGAAACAAGAAGAGTGGAAGAAAGATCCGGTTTCATATGGACGAGC 1056 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 958 TGAATATTCAGATGAGAAACAAGAAGAGTGGAAGAAAGATCCGGTTTCTTACGGACGAGC 1017 Query 1057 CAGGACCAATTTGGTTCAAGCTGCTATTCGTCCTATGGTTGATGCTTATCTTGGACCAGA 1116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 CAGGACCAATTTGGTTCAAGCTGCTATTCGTCCTATGGTTGATGCTTATCTTGGACCAGA 1077 Query 1117 CCTATCTCATGAGCTCTTCAAAAGATATGAAAATCGTGTTTCTACAAACCAAGAATTTCT 1176 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 ACTATCCCATGAGCTCTTCAAAAGATATGAAAATCGTGTTTCTACAAACCAAGAATTTCT 1137 Query 1177 CCATATAACTTGTTTTTATGGAGTCGTCGTGTTTTCCGCCATCCGAGTTTAATGTTGATA 1236 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| Sbjct 1138 CCATATAACTTGTTTTTATGGAGTCGTCGTGTTTTCCGCCATCCGAATTTGATGATGATA 1197 Query 1237 TAATT-TAGCTA 1247 || || || ||| Sbjct 1198 TAGTTATATCTA 1209 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53707245450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5