BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56325.1 Length=865 Score E Sequences producing significant alignments: (Bits) Value Ahg495723 jgi|Araly1|495723|fgenesh2_kg.8__1539__AT5G56325.1 1221 0.0 > Ahg495723 jgi|Araly1|495723|fgenesh2_kg.8__1539__AT5G56325.1 Length=850 Score = 1221 bits (661), Expect = 0.0 Identities = 780/837 (93%), Gaps = 10/837 (1%) Strand=Plus/Plus Query 1 ATGAAGTACCCAGGTGGTGATGAATTTTTCAACACGCTTATATCAAGTTGTCCAATTCTT 60 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 1 ATGAAGTACCCAGGTGGTGATGAATTTGTCAACAGGCTTATATCAAGTTGTCCAATTCTT 60 Query 61 GAAGACTTGGTTGTGAAACAAATCCTCAACGACAATTTGGCCATTGTGACTGTTAGAGTG 120 ||||| ||||||||||||||||||||||| |||||| || |||| ||||| |||||||| Sbjct 61 GAAGAGTTGGTTGTGAAACAAATCCTCAATGACAATGTGTCCATGGTGACCGTTAGAGTT 120 Query 121 CCTTCTCTAAAGAGGTTAGTCTTGAACCAAGAAGTAAAAAACGTTGTTAAAAGCATAGCT 180 |||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||| Sbjct 121 CCTTCTCTAAAGCGCTTAGTCTTGAACCAAGAAGTAAAAAACGCTGTTAATGGCATAGCT 180 Query 181 AATGGGTTTGTGATAAACACTCCTGCTTTGGAGTGCATGAATATTGTTGATTTTTCGACC 240 |||||||||||||||||||||||| |||||||||||||| | ||||||||| || |||| Sbjct 181 AATGGGTTTGTGATAAACACTCCTTCTTTGGAGTGCATGGACATTGTTGATCTTACGACT 240 Query 241 GGGTGTAACATTGTTGAGAGTGATATGCCTAACATTGTGAAGGCAAAAGTTGACATTTTT 300 |||||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||| Sbjct 241 GGGTGTCACATTGTTGAGAATGATATGCCTAACATTGTAAAGGCAAAAGTCGACATTTTT 300 Query 301 CATCCACGAACTGAGCAACTTTTGGGTTCTA-CAACTTT-AGCCAAGTATCTTCATCTCT 358 ||||| | ||||||||||||||||||||||| | ||||| || ||||||||||||||||| Sbjct 301 CATCCCCAAACTGAGCAACTTTTGGGTTCTATC-ACTTTAAG-CAAGTATCTTCATCTCT 358 Query 359 GCTTACCAACCTCAAAGAATGTGTCGTATCCTGCTGGTAATATCTTCAACCGTCTCGTAC 418 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 359 GCTTACCAACCTCAATGAATGTGTCGTATCCTGCTGGTAATGTCTTCAACCGTCTCGTAC 418 Query 419 ATCTAAGGCTATGCACATGTGAGACTGAGTGGATTAATCTACTTATGCGTTTACTCAGAA 478 |||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||| Sbjct 419 ATCTAAGGATATGCACATGTGAGACTGAGTGGATTAATCTACTTATGCGTATGCTAAGAA 478 Query 479 ATTCCCCTAGTTTACGAGTTCTTGAGATTGAACAGGTCCATTACCTTCGATATTACCAAC 538 ||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 479 ATTCCACTAGTTTACGAGTTCTTGAGATTGAACAGGCCCATTTCCTTCGATCTTACCAAC 538 Query 539 CACGACCGTGCTGGAGTGAACCAAGCTCGATACCTGAATGTCTTACTCAT--AATCTTGA 596 ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| Sbjct 539 CACGACCGTGCTGGAGTGAACCAAGCTCGATACCTGAATGTCTTA-T-ATGCAATCTTGA 596 Query 597 AACCTTCAAATGGGAGCATTATTATGGAGCAGAAGAAGAGAAAGAAGTGGCGGCATTCAT 656 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 597 AACCTTCAAATGGGAACATTATTATGGAGCAGAAGAAGAGAAAGAAGTGACGGCATTCAT 656 Query 657 CTTAAGAAGTTCAATCTGTTTAAAGAAGGCAACTATCATCCTTCATAGGTCTATTGTCCA 716 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| Sbjct 657 CTTAAGAAGTTCAATCTGTTTAAAGAAGGCAACTATCATCCCTCATAAGTCTATTTTCCA 716 Query 717 CGACGA-GAAACTTGAGATGAACAAGGAATTGTCATTATTGCCAATATGTTCACCAATTT 775 ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 717 CGA-GAAGAAACTTGAGATGCACAAGGAATTGTCATTATTGCCAATATGTTCACCAGTTT 775 Query 776 GTCAGCTTGCTTTCAGCTGAGGTTATGGTCAGTTTTAGATCAGCTATACTACAACTT 832 |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 776 GTCAGCTTGCATTCAGCTGAGGTGATGGTCAGTTTTAGATCAGCTATGTTACAACTT 832 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32023250280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5