BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56330.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331944 jgi|Araly1|331944|fgenesh1_pm.C_scaffold_8001287 1182 0.0
> Ahg331944 jgi|Araly1|331944|fgenesh1_pm.C_scaffold_8001287
Length=915
Score = 1182 bits (640), Expect = 0.0
Identities = 786/853 (92%), Gaps = 24/853 (3%)
Strand=Plus/Plus
Query 212 CACCTCCTAAACCTAAGCCCGCACCAGCACCTACACCTCCTAAACCTAAGCCCAAACCAG 271
||||||||||||||||||| ||||||||||| ||||| | |||||| || |||||||
Sbjct 74 CACCTCCTAAACCTAAGCCTGCACCAGCACCAACACCAGC---ACCTAAACCTAAACCAG 130
Query 272 CACCTACACCTCCTAATCCTAAGCccacaccagcacctacacc---tcctaaacctaagc 328
||||| ||| | | |||||||| |||||||| | ||||| ||||||||||| |
Sbjct 131 CACCT---CCTAC--A-CCTAAGCCTGCACCAGCAACAACACCAGAACCTAAACCTAAAC 184
Query 329 ctgcacc---a---gcaccagcaccaacaccagcaccgaaacctaaacctgcacctaaac 382
||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 185 CTGCACCTAAACCTGCACCAGCACCAACACCAGCACCTAAACCTAAACCTGCACCCAAAC 244
Query 383 cagcaccagGTGGAGAAGTTGAGGACGAAACCGAGTTTAGCTACGAGACGAAAGGAAACA 442
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 245 CTGCACCAGGTGGAGAAGTTGAGGACGAAACCGAGTTTAGCTACGAGATGAAAGGAAACA 304
Query 443 AGGGGCCAGCGAAATGGGGAACACTAGATGCAGAGTGGAAAATGTGTGGAATAGGCAAAA 502
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 305 AGGGGCCAGCGAAATGGGGAACACTACATGCAGAGTGGAAAATGTGTGGAATAGGCAAAA 364
Query 503 TGCAATCTCCTATTGATCTTCGGGACAAAAATGTGGTAGTTAGTAATAAATTTGGAT-TG 561
|||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||| |
Sbjct 365 TGCAATCTCCGATTGATCTTAGTGACAAAAATGTCGTAGTTAGTAATAAATTTGGATCT- 423
Query 562 CTTCGTAGCCAGTATCTGCCTTCTAATACCACCATTAAGAACAGAGGTCATGATATCATG 621
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 424 CTTCGTAGCCAGTATCTGCCTTCTAATACCACCATCAAAAACAGAGGTCATGATATCATG 483
Query 622 TTGAAATTCAAAGGAGGAAATAAAGGTATTGGTGTCACTATCCGTGGTACT-AGATATCA 680
|||||||| |||||||| |||||||||||||||||||| |||||||||| | | ||||||
Sbjct 484 TTGAAATTTAAAGGAGGGAATAAAGGTATTGGTGTCACCATCCGTGGTA-TCAAATATCA 542
Query 681 ACTTCAACAACTTCATTGGCACTCTCCTTCCGAACATACAATCAATGGCAAAAGGTTTGC 740
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 543 ACTTCAACAACTTCATTGGCACTCACCTTCCGAACATACAATCAATGGCAAAAGGTTTGC 602
Query 741 GCTAGAGGAACACTTGGTTCATGAGAGCAAAGATAAACGCTACGCTGTTGTCGCATTCTT 800
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 GCTTGAGGAACATTTGGTTCATGAGAGCAAAGATAAACGCTACGCTGTTGTCGCTTTCTT 662
Query 801 ATACAATCTCGGAGCATCTGACCCTTTTCTCTTTTCGTTGGAAAAACAATTGAAGAAGAT 860
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 663 ATACAAACTTGGAGCATCTGACCCTTTTCTCTTTTCGTTAGAAAAACAATTGAAGAAGAT 722
Query 861 AACTGATACACATGCGTCCGAGGAACATATTCGCACTGTGTCAAGTAAACAAGTGAAGCT 920
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 723 AACTGATACACATGCGTCCGAGGAACATATTCGCACTGTGTCAAGTAAACAAGTGACGCT 782
Query 921 TCTCCGTGTGGCTGTACACGATGCTTCAGATTCAAATGCCAGGCCGCTTCAAGCAGTCAA 980
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 783 TCTCCGTGTGGCTGTACACGATGCTTCAGATTCAAATGCGAGGCCGCTTCAAGCAATCAA 842
Query 981 TAAGCGCAAGGTATATTTATACAAACCAAAGGTTAAGTTAATGAAGAAATA-CTGTAATA 1039
|||||||| ||| ||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 843 TAAGCGCATGGTGTATTTATACAAACCAAAAGTTAAGTTAATGAAGAAATATC-GTAATA 901
Query 1040 TAAGTTCTTACTA 1052
||||| ||||||
Sbjct 902 CAAGTTTTTACTA 914
Score = 195 bits (105), Expect = 8e-49
Identities = 205/249 (82%), Gaps = 23/249 (9%)
Strand=Plus/Plus
Query 1 ATGAAGATATCATCACTAGGATGGGTCTTAGTCCTTATCTTCATCTCTATTACCATTGTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGATATCATCACTAGGATGGGTCTTTGTCCTTATCTTCATCTCTATTACCATTGTT 60
Query 61 TCGAGTGCACCAGCACCTAAACCTCCTAAACCTAAGCCTGCACCAGCACCTACACCTCCT 120
|||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 61 TCGAGTGCACAAGCACCT---CCT---AAACCTAAGCCTGCACCAGCACCAACACCAGC- 113
Query 121 AAACCTAAGCCCACACCAGCACCTAC-ACCTCCTAAACCT--A--AGCC-CAA-ACCAGC 173
| ||||| || | |||||||||| | || ||||| ||| | ||| ||| |||||
Sbjct 114 A--CCTAAACCTAAACCAGCACCTCCTACA-CCTAAGCCTGCACCAGCAACAACACCAGA 170
Query 174 ACCTACACCT---CCTAAACCTAAGCCTGCACCAGCACCTACACCT-C-C-TAAACCTAA 227
||||| |||| ||| |||||| |||||||||||||| ||||| | | |||||||||
Sbjct 171 ACCTAAACCTAAACCTGCACCTAAACCTGCACCAGCACCAACACCAGCACCTAAACCTAA 230
Query 228 GCCCGCACC 236
|| |||||
Sbjct 231 ACCTGCACC 239
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 179 CACCTCCTAAACCTAAGCCTGCACCAGCACC 209
|||||||||||||||||||||||||||||||
Sbjct 74 CACCTCCTAAACCTAAGCCTGCACCAGCACC 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5