BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56340.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1 1975 0.0
Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001 861 0.0
> Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1
Length=1571
Score = 1975 bits (1069), Expect = 0.0
Identities = 1321/1437 (92%), Gaps = 40/1437 (3%)
Strand=Plus/Plus
Query 1 ttttgtttccttccactctttcttcttcttcatttcctctttctttcttcttccttctcc 60
|||||||||||||||||| | ||||||||||||||||| ||||||| | || |||||||
Sbjct 1 TTTTGTTTCCTTCCACTC--T-TTCTTCTTCATTTCCTCGTTCTTTC-T-TT-CTTCTCC 54
Query 61 attttttctctA-ATCGTTGGACAAAAAAGATTGAGCCTTTTTCTGGGTTTTATTTTCTA 119
|||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 55 ATTTTTTCTC-ATATCCTTGGACAAAAAA-ATTGAGCCTTTTTCTGGGTTTTATTTTCTA 112
Query 120 TAAAGGAATCGAAAGAAGCAAGGACAGATTTTaaaaaaaaaaTCTTGGGTTTTCAAGAAA 179
|||||||||||||| ||| ||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 113 TAAAGGAATCGAAACAAGGAAGAACAGATTTGAAAAAAAAATTCTTGGGTTTTCAAGAAA 172
Query 180 AAGTAGAGACATTTTAAAGAATCAATAGATTTGTGGGGGTGAAGTAAGG--A-ACATGGA 236
||||||||||||||||||||||||| ||| || ||||| ||||| ||| | | |||||
Sbjct 173 AAGTAGAGACATTTTAAAGAATCAAGAGA-TT-TGGGGTTGAAG-GAGGATAGATATGGA 229
Query 237 GGAAACAATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTAAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 230 GGAAACAATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAAT 289
Query 297 GGAATCTGAGATCAAATGTCCCTTTTGCCAAAGCGGATTCATCGAAGAAATGAGCGGTAA 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 290 GGAATCTGAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGCGGTAA 349
Query 357 TGGCGGTGGAGGTGGTGGCAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGG 416
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 350 TAGCGGTGGAGGTGGTGGCAGAGGCATAAGAGACGTTCAAGATTCAGAAACCGATTTTGG 409
Query 417 AACAGACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AACAGACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCG 469
Query 477 AAGACGAAGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGA 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GAGACGAAGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGA 529
Query 537 CTTGACTACTAATGCTGATGGGAATGGGAATGATAGTAACAACAGTAATAATAACGTGTA 596
|||| || | |||||||||||||| ||| | | ||| ||||||||| |||||
Sbjct 530 ATTGAGTA--A-TGCTGATGGGAATGATAAT-A-A-TAATAACAGTAAT------GTGTA 577
Query 597 TCGTCATCATCGAGCTAGGAGACATGGTGGAGAGATTGATTTAGATAGAGAGTTTGAATC 656
| |||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||
Sbjct 578 TTATCATCATCGAGCTAGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTC 637
Query 657 TATCTTGAGGAGAAGACGAAGAAGCTCAGGGAATATATTGCAGTTGCTTCAAGGGATTCG 716
|||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 638 TATCTTGAGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGGATTCG 697
Query 717 TGCAGGGATTGCTTCTGAGTATGAAAGCTCTGATAACAATTGGGATAATTCTCGAGAGAG 776
||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 698 TGCAGGGATTGCTTCAGAGTATGAAAGTTCTGATAACGATTGGGATAATTCTCGTGAGAG 757
Query 777 GGATAGAGTTATAATGATTAATCCGTATAACCAATCGCTAGTTGTTC------CTTCGGA 830
|||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||
Sbjct 758 GGATAGAGTTATAATGATCAATCCGTATAACCAATCGCTCGTTGTTCAGGGATCTTCAGA 817
Query 831 TCAGAATCAGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCTGGTTT 890
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TCAAAATCCGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCTGGTTT 877
Query 891 AGATCTTTTGCTTCAGCATTTGGCTGAGAATGATCCTAATAGGCAAGGGACTCCACCTGC 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 878 AGATCTTTTGCTTCAGCATTTGGCTGAGAATGATCCTAATAGGCAAGGGACTCCTCCTGC 937
Query 951 TCGTAAAGAAGCTGTTGAAGCTTTACCAACGGTTAAGATAATGGAACCTTTGCAATGTTC 1010
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 938 TCGTAAAGAAGCGGTTGAAGCTTTGCCAACGGTTAAGATAATGGAACCTTTGCAATGTTC 997
Query 1011 TGTTTGTTTGGATGATTTTGAGAAAGGTACGGAAGCTAAAGAGATGCCTTGTAAGCATAA 1070
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 998 AGTTTGTTTGGATGATTTTGAGAAAGGAACGGAAGCTAAAGAGATGCCGTGTAAACATAA 1057
Query 1071 GTTTCATGTTCGGTGTATTGTTCCC-TGGCTTGAGCTTCATAGTTCTTGTCCTGTGTGTC 1129
||||||| | || |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1058 GTTTCATATCCGCTGTATTGT-CCCGTGGCTTGAGCTTCATAGTTCTTGTCCTGTGTGTC 1116
Query 1130 GTTTTGAGCTTCCTTCTAGTGCTGATGATGATGATGAGACTAAGACTGATTCCGAGAGAG 1189
| || ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 1117 GATTCGAGCTTCCTTCTAGTGCTGATGATGATGATGAGACAAAGATTGATTCTGAGAGAC 1176
Query 1190 TGCTGAGAACAAGAAATGTTCGGGAAA-CGAGTAACGGAAACGTTGTTGAGAATGTGGGA 1248
|| ||| |||||||||||| |||||| | | |||| ||||| ||||||||||||| |||
Sbjct 1177 CGCCGAGGACAAGAAATGTTGGGGAAAGCAA-TAACAGAAACATTGTTGAGAATGTAGGA 1235
Query 1249 AATGCGGATAGAGGAAGAGAGGATGAGGTGAGGAGTGGAAATGGGAGACGGTTTTCGTTT 1308
|||||||| ||||||||| ||||||||| |||||| || ||||| |||||||||||||||
Sbjct 1236 AATGCGGAAAGAGGAAGACAGGATGAGGCGAGGAGCGGTAATGGAAGACGGTTTTCGTTT 1295
Query 1309 CCATGGCCGTTTAGTGGATTGttctcgtcttcttcttc-t-t-cgtcttcttcAACCTCT 1365
|||||||| || |||||||| ||||||||||||||||| | | ||||||||||| ||||
Sbjct 1296 CCATGGCCATTCAGTGGATTATTCTCGTCTTCTTCTTCGTCTTCGTCTTCTTCATCCTCA 1355
Query 1366 GGATCTCAATCTGGTGAGAACAATTTCTTCTCAAGATCTTCTGGTTCTTCTCGCTGA 1422
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1356 GGATCTCAATCTGGTGAGAACAATTTCTACTCAAGATCTTCCGGTTCTTCTCGCTGA 1412
Score = 204 bits (110), Expect = 2e-51
Identities = 132/142 (93%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 1483 GTTCTCTCATTTTTCTAGCTATTGAACTTGTTATTTCCTCTGCATTTCATTCTCTGC-TT 1541
||| ||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1432 GTTTTCTCA-TTTCCTAGCTCTTGAATTTGTTATTTCCTATGCATTTCATTCTCTGCTTT 1490
Query 1542 TACTGTACATAGAAATGATGTTCTTTCACTCAGACTGTTGAAAAACAAATATCCATTGTT 1601
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TA-TGTACATAAAAATGATGTTCTTTCACTCAGACTGTTGAAAAACAAATATCCATTGTT 1549
Query 1602 GGTGTACAGAGATGATCAAATT 1623
| ||||||||||||||||||||
Sbjct 1550 GCTGTACAGAGATGATCAAATT 1571
> Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001
Length=649
Score = 861 bits (466), Expect = 0.0
Identities = 601/661 (91%), Gaps = 30/661 (5%)
Strand=Plus/Plus
Query 244 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTAATGGAATCT 303
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAATGGAATCT 60
Query 304 GAGATCAAATGTCCCTTTTGCCAAAGCGGATTCATCGAAGAAATGAGCGGTAATGGCGGT 363
|||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 61 GAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGTGGTAATAGCGGT 120
Query 364 GGAGGTGGTGGCAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACAGAC 423
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGGTGGAGGTAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACAGAC 180
Query 424 CGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGAAGACGA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGGAGACGA 240
Query 484 AGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGACTTGACT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 241 AGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGAATTGAGT 300
Query 544 ACTAATGCTGATGGGAATGGGAATGATAGTAACAACAGTAATAATAACGTGTATCGTCAT 603
| | |||||||||||||| ||| | | ||| ||||||||| |||||| ||||
Sbjct 301 A--A-TGCTGATGGGAATGATAAT-A-A-TAATAACAGTAAT------GTGTATTATCAT 348
Query 604 CATCGAGCTAGGAGACATGGTGGAGAGATTGATTTAGATAGAGAGTTTGAATCTATCTTG 663
|||||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 349 CATCGAGCTAGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTCTATCTTG 408
Query 664 AGGAGAAGACGAAGAAGCTCAGGGAATATATTGCAGTTGCTTCAAGGGATTCGTGCAGGG 723
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 409 AGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGGATTCGTGCAGGG 468
Query 724 ATTGCTTCTGAGTATGAAAGCTCTGATAACAATTGGGATAATTCTCGAGAGAGGGATAG- 782
|||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 469 ATTGCTTCAGAGTATGAAAGTTCTGATAACGATTGGGATAATTCTCGTGAGAGGGATAGT 528
Query 783 A---------G--TTATAATGATTAATCCGTATAACCAATCGCTAGTTGTTC------CT 825
| | |||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 529 AATAACAATAGAGTTATAATGATCAATCCGTATAACCAATCGCTCGTTGTTCAGGGATCT 588
Query 826 TCGGATCAGAATCAGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCT 885
|| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TCAGATCAAAATCCGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCT 648
Query 886 G 886
|
Sbjct 649 G 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5