BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56360.1
Length=2303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950295 jgi|Araly1|950295|scaffold_802182.1 3083 0.0
> Ahg950295 jgi|Araly1|950295|scaffold_802182.1
Length=2005
Score = 3083 bits (1669), Expect = 0.0
Identities = 1905/2014 (95%), Gaps = 36/2014 (2%)
Strand=Plus/Plus
Query 56 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTAGTAATATC-TTCCTTTGTCTCCGTCTCT 114
||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||
Sbjct 1 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTGGTAATATCATT-CTTGGTCTCCGTCTCT 59
Query 115 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTGCCATTAGATCAAGCTCGTCTCCACCG 174
||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 60 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTTCTATTAGATCAACCTCGTCTCCACCT 119
Query 175 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCAGAG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCTGAG 179
Query 235 ATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGT 294
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 180 ATAAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAACTTAATGATGATTTCTGT 239
Query 295 GATTGTTCAGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAACTGGAAAATTCTAT 354
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 GATTGTCCTGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAAATGGAAAATTCTAT 299
Query 355 TGCCGGAACGCCGGCCACTCTCCGGTGATTTTGTTTTCTTCCAGAGTTAATGATGGTATT 414
|| ||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 300 TGTCGGAATGCCGGCCACTCTCCGTTGGTTTTGTTTTCTTCCAGAGTCAATGATGGTATT 359
Query 415 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCACGTATCATGCCAAAATACATGC 474
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 360 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCAAGTGTCATGCCAAAATACATGT 419
Query 475 TGGGAAGCTGGAAAAGCTGCTCGAGAAAATCTGAAGAAGAAAATTGAAACATATAATCAA 534
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 TGGGAAGCTGGGAAAGCTGCTCGAGAAAATCTGAAGAAAAAAATTGAAACATATAATCAA 479
Query 535 GGGCTTGTAATAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTGGAGAAAGATGCA 594
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GGGCTTGTAGTAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTAGAGAAAGATGCA 539
Query 595 GCAGAATTGAAGAAGCTGAAAAGTG-AGCAGAAGATTCTGAAAGGCCTTGTTGATCAGCT 653
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 540 GCAGAATTGAAGAAGCTGAAAAGTGAAG-AGAAGATTCTGAAAGGCCTTGTTGATCAGCT 598
Query 654 GAAAGATCGTAAAGAACAAATTgagaaggtagaggagaaggagcgtctacagaaagaaaa 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TAAAGATCGTAAAGAACAAATTGAGAAGGTAGAGGAGAAGGAGCGTCTACAGAAAGAAAA 658
Query 714 ggaggaaaaggaaaagaaagaggCCGAATTAGCAGCCCAGCAAGGAAAAGGGGATGCTGA 773
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 GGAGGAGAAGGAAAAGAAAGAGGCCGAATTAGCAGCCCAGCAAGGAAAGGGGGATGCTGA 718
Query 774 GGAGAAGACAGATGACAGTGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGACGCCTGC 833
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 GGAGAAGACAGATGACAATGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGGCGCCTGA 778
Query 834 AGTTTCACA--AC-------A---CGATGAAACCACACATCATGATGAGATTGGTAATTA 881
||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 779 AGTTTCACAGCACGATGAAAATCCCGATGAAACCACACATCATGATGAGATTGGTAATTA 838
Query 882 CAAGGATTATCCTTCAGATGAGGAGCCA---GC---AGCTGAAGGT----GAAC--CAAC 929
||| |||||||||||||| ||||||||| || |||||||| | ||| ||||
Sbjct 839 CAAAGATTATCCTTCAGAAGAGGAGCCAGCTGCTGAAGCTGAAGCTAACCCAACAGCAAC 898
Query 930 AAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAGCATGTTGTGGAGA-GAA 988
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 899 AAGTATATTGGAAGAGGCTACTCACACTCATCCAGCAGACGAGCATGTTGTGGAGACG-A 957
Query 989 AAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCCCCACAGATGAATCTCAAAATGATG 1048
| ||||||||| ||||||||||||||| | | | |||||| | |||||||||||||
Sbjct 958 AGGAGGAATCTCCCTCATCTGAGGATT-C-CGT----CACAGAAGGGTCTCAAAATGATG 1011
Query 1049 GTAGTGCTGAAAAGGAGGAATCAGACGAGGTTAAGAAAGTGGAGGATTTTGTAACCGAGA 1108
||||| | |||| ||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 1012 GTAGTACCAAAAAAGAGGAATCAAACGAGGTTAAGAAAGTGGAGGATCTTGTAACCGAAA 1071
Query 1109 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1131
Query 1169 AGAAATCTGATAAGCCAACTGAGGCAGACGATATCCCCAAAGCTGATGATCAGGAAAACC 1228
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1132 AGAAATCTGATAAGCCAACTGAGGCAGACGATAGCCCCAAAGCTGATGATCAGGAAAACC 1191
Query 1229 ATGAGCACACGCCCATCACTGCACATGAAGCAGATGAAGATGATGGATTTGTTTCAGATG 1288
||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1192 ATGAGCACACGCCCACCACTCCACATGAAGTAGATGAAGATGATGGATTTGTTTCAGATG 1251
Query 1289 GTGATGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCTGAAGATGATTCCT 1348
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1252 GTGACGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCCGAAGATGATTCCT 1311
Query 1349 ATGAAGAGGAGTATCGCCATGATTCTAGTTCTTCATACAAATCTGATGCAGATGATGATG 1408
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1312 ATGAAGAGGAGTATCGCCATGATTCTACTTCTTCATACAAATCTGATGCCGATGATGATG 1371
Query 1409 TCGATTTTTCAGAGACAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1468
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TCGATTTTTCAGAGTCAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1431
Query 1469 AGAACATTTTGCTGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCAGAGGCTG 1528
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1432 AGAACATTTTGCAGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCGGAGGCTG 1491
Query 1529 ATCGGGTACGCAAAGAATACGACGAGTCAAGCTCCAAACTGAATAAAATACAGTCAAGGA 1588
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1492 ATCGGGTACGCAAAGAATACGACGAGTCGAGCTCCAAACTGCACAAAATACAGTCAAGGA 1551
Query 1589 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCAGAGAAAGAGTTCTATTCAT 1648
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1552 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCGGAGAAAGAGTTCTATTCAT 1611
Query 1649 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1671
Query 1709 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAGTGGGACAAATTTG 1768
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1672 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAATGGGACAAATTTG 1731
Query 1769 AGAACTCTTACCAATTCATGTCATATACCAACGGAGAAAAATGCTGGAATGGTCCCGATA 1828
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1732 AGAACTCTTACCAATTCATGTCATATACCAACGGAGATAAATGCTGGAACGGTCCCGATA 1791
Query 1829 GAAGCCTGAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1888
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GAAGCCTTAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1851
Query 1889 CAAGCCGTTGCGAATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1948
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1852 CAAGCCGTTGCGAATATGCGGCGATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1911
Query 1949 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCTCAGAATCACG 2008
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1912 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCCCAGAATCACG 1971
Query 2009 ACGAACTCTGATCATTTTCACCTGAAATAATTCT 2042
||||||||||||||||| || |||||||||||||
Sbjct 1972 ACGAACTCTGATCATTTCCATCTGAAATAATTCT 2005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86731487865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5