BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56368.1
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495728 jgi|Araly1|495728|fgenesh2_kg.8__1544__AT5G56368.1 405 8e-113
> Ahg495728 jgi|Araly1|495728|fgenesh2_kg.8__1544__AT5G56368.1
Length=282
Score = 405 bits (219), Expect = 8e-113
Identities = 261/282 (93%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATGCCACTTCTTTCATTGCCCTCGCTTATCTTCTTGCATCTGCGTTAATGACT 60
|||||||| |||||||||| |||||||||| ||||||||||||||||||| ||| | |||
Sbjct 1 ATGGCTAAGGCCACTTCTTACATTGCCCTCACTTATCTTCTTGCATCTGCATTATTAACT 60
Query 61 ACGGTGGTGCTTGGGAATCGGCAATGTGTACAAGCCATGGATTGCACAAACGTTTGTTCA 120
|||||| ||||| |||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 61 ACGGTGACGCTTGAGAATCGTCAATGTGTACAAGGCATGGATTGCACCGACGTTTGTTCA 120
Query 121 CACGGTGGTCTCTGCACCAAAAACGGTAAGTGTGTTTGTTGGTCGCCAAACGTAGTGATC 180
|||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct 121 CACGGTGGTCTCTGCACCGAAAATGGTAAGTGTGTTTGTTGGTCGCCAAACGCAGTGATC 180
Query 181 AACAGCGGACCTCCGTGCTGGTCGGATGAAATGTGCTTTAGTACATGTGGTGGAAATGGT 240
||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 181 AACAGCGGACCGCCGTGCTGGTCAGACGAAATGTGCTTTAGTACATGCGGTGGAAATGGT 240
Query 241 GGTTATTGTAACTATGATATTGGAGGATGTTTCTGCCAATGA 282
||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 GGTTATTGTAACTATGATATTGGAGGATGTTACTGCCAATGA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9844141962
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5