BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56369.1
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917332 jgi|Araly1|917332|Al_scaffold_0008_2083 390 2e-108
> Ahg917332 jgi|Araly1|917332|Al_scaffold_0008_2083
Length=285
Score = 390 bits (211), Expect = 2e-108
Identities = 262/286 (92%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 1 ATGACAAAGATCGGTTTCTACTTAGCTACATATGCAACCATCTACATCATATTATCACCT 60
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGACAAAGATAAGTTTCTTCTTAGCTACGTATGCAACCATCTACATCATATTATCACCT 60
Query 61 GGGCTACTAGCCACGGCGGCGCGTGAGAATCTGCATCACCAATGCTTTTGCGAGTCACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGCTACTAGCCACGGCGGCGCGTGAGAATCTGCATCACCAATGCTTTTGCGAGTCACCA 120
Query 121 AGCAAGTGTGATTGCTTCCCAACGA-CACCAACACCGCCAACATCTGTGAATAAGTCACG 179
|||| |||| |||||||||| | | |||| |||||| ||||||||||||||||| ||||
Sbjct 121 AGCACGTGTTCTTGCTTCCCACC-ATCACCGACACCGTCAACATCTGTGAATAAGCCACG 179
Query 180 GAAA-G-GC-GGACCACTATGTACGACAGACGGTGATTGCAAACATTTTTGTCGTCCTAA 236
|||| | || |||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 180 GAAAAGCGCCGGACCACTATGTTTGTCAGACGGTGATTGCAAACATTTTTGTCGTCCGAA 239
Query 237 AAAAGGTGTTTGTAACATCGATTTCGAAACGTGTATTTGTCAATGA 282
|||||||||||| ||||| ||||||||||||||| ||||||| |||
Sbjct 240 AAAAGGTGTTTGCAACATTGATTTCGAAACGTGTGTTTGTCACTGA 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9844141962
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5