BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56370.1
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495730 jgi|Araly1|495730|fgenesh2_kg.8__1546__AT5G56370.1 1853 0.0
Ahg950298 jgi|Araly1|950298|scaffold_802185.1 379 3e-104
> Ahg495730 jgi|Araly1|495730|fgenesh2_kg.8__1546__AT5G56370.1
Length=1389
Score = 1853 bits (1003), Expect = 0.0
Identities = 1225/1329 (92%), Gaps = 27/1329 (2%)
Strand=Plus/Plus
Query 82 CAGCAAAA-CCATTAGATTAAAAGATTGGAGAGCTATATGGACAGTATAAGTTTGTTGCC 140
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 CAGCAAAATCC-TTAGATTAAAAGATTGGAGAGCTATATGGACAGTATCAGTTTGTTGCC 60
Query 141 CGATGATTTCCTCTTGC-GCATACTGTCATTGCTTCCTACAAAAGACGTGTTGAACACTA 199
||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||
Sbjct 61 CGATGATTTCCTCTTGCAG-ATACTGTCATTGCTTCCTACAAAAGATGTCTTGAACACTA 119
Query 200 GTGTTTTGTCTAAACGATGGCGGTATCTTTGGAAGTTGGTGCCAAAACTTCAGTACAGCC 259
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 120 GTGTTTTGTCTAAACGATGGCGGTATCTGTGGAAGTTGGTGCCTAAACTTCAGTACATCG 179
Query 260 TTATCGATAAGAATGCTGATCATGGGACATTTGTGCGGTTTGTGGACAGATCGTTGCTAC 319
||||||| |||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct 180 ATATCGATGAGAATGCTGATCATGGGATATTTGTGCGGTTTGTGGATAGATCATTGCTAC 239
Query 320 TTAGCATGGCTCCGGTTTTAGAGAGTTTACATTTAAAGTTAGGTCGACAATGCAGCGAAG 379
||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |
Sbjct 240 TTAGCATGGCTCCGGTTTTAGAGAGTTTACAATTCAAGTTACGTCGACAATGCAGCGATG 299
Query 380 TAGATATCGGGTTTTGGGTTAGAATTGCAGTGGAAAAAGGTTTGTGTGAGCTAGATTTCG 439
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 300 TAGATATCGGGTTTTGGGTTAGAATTGCAGTGGAACAAGGTTTGCGTGAGCTAAATTTCG 359
Query 440 ATTATGAGCATTAT-AAGACTGAGCCTTGCAGATTGCCTCAGAGCTTGTTCACATGCGGA 498
|||||||||||||| || | || ||||||||||||||||||||||||||||||||| |||
Sbjct 360 ATTATGAGCATTATCAA-ATTGTGCCTTGCAGATTGCCTCAGAGCTTGTTCACATGTGGA 418
Query 499 ACACTCACGGTGCTAAAACTAAAAAACGTATCGCTCAAGGATGTACAATTCCCGGTATGT 558
|||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 419 ACACTCGTGGTGCTAAAACTTAAAAACGTATCGCTTAAGGATGTACAATTCCCGGTATGT 478
Query 559 TTTAAGTTGCTCAAAACGCTGCACCTGGAGTATGTGATTTTCCTAGACAAGGAAACTCCT 618
||||||||||||||||||||||||||||||| |||||||||||| ||| | ||| |||||
Sbjct 479 TTTAAGTTGCTCAAAACGCTGCACCTGGAGTCTGTGATTTTCCTGGACGATGAATCTCCT 538
Query 619 CAGAAGCTTTTATCAAGCTGCCCTATTCTTGAAGTCTTTGATTTGACTCGAGATGACGAC 678
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 539 AAGAAGCTTTTATCAAGCTGCCCTATTCTTGAAGTCTTGGATTTGACTCGAGAGGACGAC 598
Query 679 GACGTTGATAATGTTATGAGTTTCTCTGTTATGGTGCCTTCGTTACAAAGATTTATCTAT 738
|||||||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 GACGTTGACAATGTGACGAGTTTCTCTGTTATGGTGCCTTCGTTACAAAGATTGATCTAT 658
Query 739 TGTGGAGGATCTGGTGCTGAGCTTGTGATGAATACGCCTTCTTTGAAGTACTTAAAG-CT 797
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 659 AATGGAGGATTTGGTGCTGAGCTTGTGATGAATACGCCTTCTTTGAAGTACTTTAAGACT 718
Query 798 TTCAGGTTGTGGTTACGAGTGTATGATTGGGAATTTGCCTGAGATTGTGGAAGCACATGT 857
|| || |||||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 719 TT-AGATTGTGGTTCCGAGTGTATGATTGAGTATTTGCCTGAGATTGTGGAAGCACATGT 777
Query 858 TGAGGTTGCATGTTCCA-C--TGATGATATCCTTACATCTCTTGCATCAGTCAAACGCCT 914
||||||| ||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 778 TGAGGTTACATGTTCCAACACTGATGATATCCTCAAATCTCTTGCATCAGTCAAACGCCT 837
Query 915 CTTGCTATGTTTACCCACAGAGCCTGAGTTACCTACTGGTACCATCTTCCACCAGCTTGA 974
|||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 CTTGTTATGTTTACCCTCAGAGCCTGAGTTACCTACTGGTAGTATCTTCCACCAGCTTGA 897
Query 975 ACACTTGGAGTTTTGTTCTTGTTG-CACAGAATGGGATATACTTATGTTTATGCTCAAAC 1033
||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||
Sbjct 898 ACACTTGGAGTTTTGCACTTGT-GACACAGAATGGGATCTACTTATGTTTATGCTCAAAC 956
Query 1034 ATTCCCCGAAACTTCGATCTCTCAAGCTTAACGA-G-A-------CCCACGGCTACACTA 1084
|||||||||||||||||||||||| ||||||||| | | |||| ||||||||||
Sbjct 957 ATTCCCCGAAACTTCGATCTCTCATGCTTAACGATGTAAGTATAACCCATGGCTACACTA 1016
Query 1085 TTGTTTCTCAAAGTGATCCTATGTTTCATTGGGAGGAACCAAGCTCGGTTCCTGAAACTT 1144
|||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1017 TTGTTTCTCAAAGT---CCTATGTTTCATTGGGAGGAACCAAACTCTGTTCCTGAAACAT 1073
Query 1145 TGATGTTTGTTCTTGAGACTTTGGAGTGGAGAAACTACAGAGGGTTGAAGATGGA-AAAC 1203
|||||||||||||||||||||| |||||||||||||||||||||| |||||| || |||
Sbjct 1074 TGATGTTTGTTCTTGAGACTTTAGAGTGGAGAAACTACAGAGGGTGGAAGATAGAGAAA- 1132
Query 1204 GAACTCGCAAGTTTTCTCTTGAAACATTCAAGACGTCTGAAGATTGCAACCTTTTCGCCA 1263
||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1133 GAACTCGCAAGTTTTATCTTGAAACATTCAAGGCGTCTAAAGATCGCAACCTTTTCGCCA 1192
Query 1264 GCAGACTGCAAACAAGTGAGAATCGAATTACGTACGACAGTTGGAATGAAATATCGTATA 1323
|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1193 GCAGACTGCACACAAGTAAGAATGGAATTACGTACGACAGTTGGAATGAAATATCGTATT 1252
Query 1324 CTCATGGAATTGGCGCGTTTGCCAAGGGGTTCAGCAGAGTGTGAGCTTGTGTTTGGTTAA 1383
|||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 1253 CTCACGGAATTGGCGCGTTTGCCGAGGGGTTCAGCAGAGTGTGAGTTTGTTTTTGGTTAA 1312
Query 1384 GTAAGCTTT 1392
||||||||
Sbjct 1313 CTAAGCTTT 1321
> Ahg950298 jgi|Araly1|950298|scaffold_802185.1
Length=400
Score = 379 bits (205), Expect = 3e-104
Identities = 340/403 (84%), Gaps = 17/403 (4%)
Strand=Plus/Plus
Query 1006 TGGGA-TATACTTATGTTTATGCTCAAACATTCCCCGAAACTTCGATCTCTCAAGCTTAA 1064
||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 9 TGGGAGT-TACTTATGTCTATGCTCCAACATTCCCCGAAACTTCGATCTCTCAAGCTTAA 67
Query 1065 CGAGACCCA-CG-GCTACACTATTGTTTCTCAAAGTGATCCTATGTTTCATTGGGAGGAA 1122
||| | ||| | | | || ||||||||| | | |||||||| |||| |||||||||
Sbjct 68 CGATATCCATCATGATTG-CT-TTGTTTCTCGA-G--ATCCTATGGTTCACTGGGAGGAA 122
Query 1123 CCAAGCTCGGTTCCTGAAACTTTGATGTTTGTTCTTGAGACTTTGGAGTGGAGAAACTAC 1182
|||||||| | ||| |||| ||||| || |||||||||||||| |||||||||||||||
Sbjct 123 CCAAGCTC--T-CCTAAAACGTTGATCTTCGTTCTTGAGACTTTTGAGTGGAGAAACTAC 179
Query 1183 AGAGGGTTGAAGATGGAAA-ACGAACTCGCAAGTTTTCTCTTGAAACATTCAAGACGTCT 1241
||||| | ||||| |||| | || || ||||| ||| |||||||||||||||| |||||
Sbjct 180 AGAGGATGGAAGAAAGAAAGA-GATCTTGCAAGGTTTATCTTGAAACATTCAAGGCGTCT 238
Query 1242 GAAGATTGCAACCTTTTCGCCAGCAGACTGCAAACAAGTGAGAATC-GAATTACGTACGA 1300
|||||||| || ||||||||| ||||| || |||| |||| | | ||||| ||||| |
Sbjct 239 AAAGATTGCGACTTTTTCGCCACCAGACACCACACAACTGAGGA-CAGAATTTCGTACCA 297
Query 1301 CAGTTGGAATGAAATATCGTATACTCATGGAATTGGCGCGTTTGCCAAGGGGTTCAGCAG 1360
|| ||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||
Sbjct 298 CATTTGGAATGAAATATCGTATTCTCACGGAATTGGCGCGTTTGCCGAGGGGTTCAACAG 357
Query 1361 AGTGTGAGCTTGTGTTTGGTTAAGTAA-GCTTTTGTATAAAGA 1402
| ||||||||||| ||||||||||| | || ||| ||||||||
Sbjct 358 AATGTGAGCTTGTCTTTGGTTAAGTTATGCCTTTCTATAAAGA 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5