BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56380.1
Length=2014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950301 jgi|Araly1|950301|scaffold_802188.1 852 0.0
> Ahg950301 jgi|Araly1|950301|scaffold_802188.1
Length=742
Score = 852 bits (461), Expect = 0.0
Identities = 631/711 (89%), Gaps = 19/711 (3%)
Strand=Plus/Plus
Query 733 GGTTTGTGGACAGATCGTTGCTGTCACGTGAAGGTCGTGTTCTACAAACTCTGTTTCTCA 792
||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||| | |||||
Sbjct 1 GGTTTGTCGACAGATTGTTGATGTCACGTGAAGGTCTTGTTCTACAAAGTCTCTATCTCA 60
Query 793 AGTTAGGTCGACAATGTTCATATGATGATATTGCGATTTGGGTTGGAATCGCAGTGAAAC 852
|||||||||||| ||| ||||||||||||||||| || ||| |||||||||| |||||||
Sbjct 61 AGTTAGGTCGACGATGCTCATATGATGATATTGCAATCTGGTTTGGAATCGCGGTGAAAC 120
Query 853 GTGGTCTAATGGAGCTGAAACTCAAATAC-ACTGACAGC-TATTATCCAAAGCG-TAGTT 909
|||||||||||||||| |||||| ||||| | || | || || |||| | | |||||
Sbjct 121 GTGGTCTAATGGAGCTCAAACTCGAATACGA-TGGCTGCTTA-GATCC-GCGGGATAGTT 177
Query 910 CTCTTCCAAGAAGTCTTTACACTTGTGAAACACTTGTGGTCTTGAAATTGAAGAAAGGTT 969
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTCTTCCAAAAAATCTTTACACTTGTGAAACACTTGTGGTCTTGAAATTGAAGAAAGGTT 237
Query 970 ATTTGGATGTTCCTGATCTCGTTTGTCTTAGGTCTCTGAAAACTTTATCGCTCAGAGATA 1029
|||||||||||||||||||||||||||| ||||||||||||||||| || |||| | ||
Sbjct 238 ATTTGGATGTTCCTGATCTCGTTTGTCTAAGGTCTCTGAAAACTTTGTCCCTCAAATCTA 297
Query 1030 TGAAT-TACTCCAACGCCAGTTGTCTCCTTAGACTTTTAGCCAGTTGTCCTGTTCTTGAA 1088
|| || |||||||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 298 TG-ATATACTCCAACGCCAGTTCTCTCCTTAGACTTTTACCCAATTGTCCTGTTCTTGAA 356
Query 1089 GAGTTGTTCATACAACAAGGTTACTAT-GATTCCTGCGCGTTGAGTTTCAAGATTATACT 1147
|| ||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||
Sbjct 357 GACTTGTTCATACAACAATGTTA-TATACATTCCTGCGCGCTGAGTTTCAAGATTATACT 415
Query 1148 GCCTTGCTTGAAGAAGTTATCTTATCTCCCaaaaagaaa-aaaa--aaGTATTCTGGGAT 1204
||||| ||||||||||||||||| | ||||||||||||| |||| ||||||| |||
Sbjct 416 GCCTTCCTTGAAGAAGTTATCTTTTGTCCCAAAAAGAAAGAAAAGGTGGTATTCTATGAT 475
Query 1205 TGA-CCGATCTG-AAGTTTCTGGTGGAATTTCAGGACTTGTGTTAGATGCTCCTTCTTTG 1262
||| ||| || | || |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 476 TGACCCG-TC-GAAAACTTCTAGTGGAATCACAGGACTTGTGTTAGATGCTCCTTCTTTG 533
Query 1263 AAATACTTGCACATTGTAGATCGCTCGGGTCTTTTTTCGGTTAGCGAGATTATCAACATC 1322
||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 534 AAATACTTGAACATTGTAGATCGTTCGGGTGGTTTTTCGGTTAGCGAGATTATTAACATC 593
Query 1323 AATGCTGTAGTGAAAGCCACTCTTGAGGTTAATGC-CAGCCGACCCGAGAAGCTTCTGTA 1381
|||||||| ||||| ||||| |||||||| || | ||||| |||||||||||||||| |
Sbjct 594 AATGCTGTGGTGAAGGCCACAATTGAGGTT-ATTCTCAGCCAACCCGAGAAGCTTCTGCA 652
Query 1382 TTCTCTTGTTTCCGTTGAGCATATTCGTTTATGTTTATCTGCTACAGAGGT 1432
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTCTCTTGTTTCCGTTGAGCATATTCGTTTATGTTTATCTGCTACAGAGGT 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75723407060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5