BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56390.1

Length=1287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950303 jgi|Araly1|950303|scaffold_802190.1                        296    3e-79


> Ahg950303 jgi|Araly1|950303|scaffold_802190.1
Length=419

 Score =  296 bits (160),  Expect = 3e-79
 Identities = 205/227 (90%), Gaps = 2/227 (1%)
 Strand=Plus/Plus

Query  765  CACCGCAAGTATGGACGTTTTTTCTCCCCAAACTAAGGAGATTTTGGGCTCTCTAACTTC  824
            |||||||||| | ||| ||| |||||||||||||| |||| |||||||||||||||||||
Sbjct  35   CACCGCAAGTGTCGACATTTATTCTCCCCAAACTACGGAGCTTTTGGGCTCTCTAACTTC  94

Query  825  AACCAAACGTCTTTTTCTCTGCTTACCAACTTCAAAGGATGCGTATCCTGTTGGTAATAT  884
            |  ||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct  95   AGTCAAGCGTCTTTTTCTCTGCTTACCAACCTCAGAGGATGCGTATCCTGTTGGTAATAT  154

Query  885  ATT-TGGCTCTCTTATACATTTAACTATATGCACATGTGAGACAGAATGGTTGAATGTAC  943
            ||| || ||||||| ||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct  155  ATTCTG-CTCTCTTGTACATTTAACTGTATGCATATGTCAGACAGAATGGTTGAATGTAC  213

Query  944  TTATACGTGTGCTCAGAGATTCCCCTAATTTAAAAACACTCAAAATT  990
            | ||||||||||||||||| ||||| ||||||||||| |||| ||||
Sbjct  214  TCATACGTGTGCTCAGAGACTCCCCAAATTTAAAAACTCTCATAATT  260



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48111121254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5