BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56400.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495732 jgi|Araly1|495732|fgenesh2_kg.8__1548__AT5G56400.1 1967 0.0
> Ahg495732 jgi|Araly1|495732|fgenesh2_kg.8__1548__AT5G56400.1
Length=1368
Score = 1967 bits (1065), Expect = 0.0
Identities = 1274/1375 (93%), Gaps = 14/1375 (1%)
Strand=Plus/Plus
Query 1 ATGAATCTCATTCGCTTTCTCCTCGTGTTTCAAGGTAAAATTCAGATGAACGAATCAAG- 59
|||||||||||||| ||| |||| ||||||||||||||||||||| |||| ||||| ||
Sbjct 1 ATGAATCTCATTCGATTTTTCCTTGTGTTTCAAGGTAAAATTCAGGTGAAAGAATC-AGC 59
Query 60 aaaaaaaTTGAATTGTCAGAGTCGTCAATTCAATGTGGACAAGATCAGTGATCTTCCTGA 119
|||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAAATCTTCAATTGTCAGAGTGGTCAATTCAATGTGGACAAGATCAGTGATCTTCCTGA 119
Query 120 AGATCTACTCGTACACATATTGTCTTTACTTCCGACGACAAACGATATTGTTGCCACAAG 179
|||||| || ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 120 AGATCTGCTTGTACACATATTGTCTTTACTTCCCACAACAAACGATATTGTTGCCACAAG 179
Query 180 TGGTGTATCGAAACGATGGGAATCTCTGTGGACGAAGGTACATAAACTTAGGTTCAACGA 239
|||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||
Sbjct 180 TGGTGTTTCGAAACGATGGAAATCTCTGTGGAAGAAGGTACATAAACTCAGGTTCAACGA 239
Query 240 T-AGAATCTA-CGACGGTAAAAGGTACGATAGTTTCCTTCACTTTGTTGAGAAATCTTTG 297
| | |||||| | ||||||||| ||| || |||||||||||||||||||||||| |||||
Sbjct 240 TCA-AATCTATC-ACGGTAAAAAGTATGAGAGTTTCCTTCACTTTGTTGAGAAAGCTTTG 297
Query 298 ATATTACATAAGGCTCCTACTTTAGTAAGCCTCAGACTTAGCGTCGGTCCAAAATGTACC 357
|||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 298 GTATTACATAAGGCTCCTACTCTAGTAAGCCTCAGACTTAGTGTTGGTCCAAAATGTACA 357
Query 358 GCTGATGATATCGGATTGTGGATTAAACTCGCGCTGGACCGCAACATCTGCGAGCTAATA 417
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 358 GCTGATGATATCGGATTGTGGATTAAACTCGCGCTGGATCGGAATATCTGCGAGCTAATT 417
Query 418 ATCAAACATTATCCCGATCACGGACACATCAGGTTATCTAGGAGACTATGCGACAGCAAA 477
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 ATCAAACATTATGCCGATCACGGACACATCAGGTTATCTAGGAGACTATGCGATAGCAAA 477
Query 478 ACCCTAGTTTCCTTAAAACTCAAGAACGCAATTCTTGGAGCTATTTGGCTCCCAACATGT 537
||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 478 ACCCTTGTTTCTTTAAAACTCAAGAACGCGATTCTTGGAGCTATTTGTCTCCCAGCATGT 537
Query 538 TTCATTTCACTCAAAACGCTTCACCTTCGATATGTGAAGTATTCCGGGGATGAATCTGTT 597
|||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||
Sbjct 538 TTCAGTTCACTCAAAACGCTTCATCTTCGATATGCGAAGTATTCCGGGGATGAATTTGTT 597
Query 598 CGTACTCTCATATCAAGCTGTCCTTCACTTCGAAATCTTGTTGTGAAACGACACAATGAA 657
|||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 598 CGTAATCTCATATCAAGCTGTCCTTCACTTCAAAATCTTGTCGTGAAACGACACAATGAA 657
Query 658 GACAACGTCAAGAGATTTGCTATTATTGTGCGTTACTTACAGAGCTTGACGGTTTATTTA 717
|||||||| |||||||||| ||| || |||||||||||| |||| |||||||||||||||
Sbjct 658 GACAACGTGAAGAGATTTGTTATAATAGTGCGTTACTTAAAGAGTTTGACGGTTTATTTA 717
Query 718 TCACCTCTACATGGTGTAGCAGATTCAGATGCATATGTGATAAATACACCTAATTTGAAG 777
|| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 TCGCCGCTACATGATGTAGCAGATTCATATGCATATGTGATAAATACACCTAATTTGAAG 777
Query 778 TACTTAAACATTAAGGATCATTACACTGATCTATGCTCTTTTGAAGATATGCCTTACCTA 837
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 TACTTAAACATTAAAGATCATTACACTGCTCTATGCTCTTTTGAAGATATGCCTTACCTA 837
Query 838 GACGAGGCTAATCTCGACGTTGCCTTCACCCATACTGAGAAtttttttGAATCTCTTACC 897
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 GATGAGGCTAATCTCGACGTTGCCTTCACCCATACTGAGAAGTTTTTTGAATCTCTTACC 897
Query 898 TCTGTCAAGAAACTTTCCTTATGCTTGAAGAAATCAAATGCTCAGTATCCTGAGGGTATT 957
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 898 TCTGTCAAGAAACTTTCCTTATGCTTAAAGAAATCAGAGGCTCAGTATCCTGAGGGTATT 957
Query 958 ATCTTCTCTCAGCTTGATCATTTGGAGCTATGTACATGTGATGATTCAAAGTGGTTGA-A 1016
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 958 ATCTTCTCTCAGCTTGTTCATTTGGAACTATGTACATGTGATGATTCAAAGTGGTT-ATA 1016
Query 1017 TATACTCGC-AATGTTGCTTCCAGATTCTCCTAAACTTCGAGTTCTCAAGCTTAACGATA 1075
| ||||||| || ||||||| ||||||||| ||||||||||| ||||||||||| ||||
Sbjct 1017 TCTACTCGCGAAA-TTGCTTCGAGATTCTCCAAAACTTCGAGTGCTCAAGCTTAATGATA 1075
Query 1076 AGAACCATGATTTCGTT-GACAAGTACTGCTCTTGTACTTGGAACCAGCAACCAAGTTAT 1134
||||||||||||||||| | |||||| ||| || || ||||||| |||||||||||||||
Sbjct 1076 AGAACCATGATTTCGTTAG-CAAGTATTGCACTAGTTCTTGGAATCAGCAACCAAGTTAT 1134
Query 1135 GTTCCGGAATGTTTGACT-AAAAGTCTTGAAATTTTCGAGTGGCGAAACTATAAAGCAAC 1193
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTTCCACAATGTTTGACTGAAAA-TCTTGAAATTTTCGAGTGGCGAAACTATAAAGCAAC 1193
Query 1194 ATTCAGAGAGAGAGACGTTGCGGTGTATATCTTGAAGAATAGTACTTGCTTAAAGAAGAC 1253
||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1194 ATTCAAAGAGAGAGATGTTGCGGTGTATATCTTGAAGAATAGTACTTGTTTAAAGAAGTC 1253
Query 1254 GGTTATCTCCCCCAAATTAAAGATTTCAGGAGAGATTTGTGATCATCATATTATCAGAGA 1313
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 1254 GGTTATCTCCCCCAAATTCAAGCTTTCAGGAGAGATTTGTGATCATCATATCATCCGAGA 1313
Query 1314 AGACTTGGCATCTTTGTTCATGGGCTCGAGTTCTTGTGAACTTAAATTCGACTGA 1368
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1314 AGACTTGGCATCTATGTTCATGGGCTCGAGTTCTTGTGAACTTAAATTGGACTGA 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5