BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56410.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497461 jgi|Araly1|497461|fgenesh2_kg.493__1__AT5G56410.1 1500 0.0
> Ahg497461 jgi|Araly1|497461|fgenesh2_kg.493__1__AT5G56410.1
Length=1602
Score = 1500 bits (812), Expect = 0.0
Identities = 1027/1127 (91%), Gaps = 30/1127 (3%)
Strand=Plus/Plus
Query 1 ATGGACAAGATTACTGGATTTTCTGATGATGAATTGCTAGTGAAGATTTTATCGTTTCTT 60
||||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||
Sbjct 1 ATGGACAAGATCACTGGATTTTCTGATGATGAATTGCTCGTAAAGATCTTATCATTTCTT 60
Query 61 CCAACAAAAGCTGCTGTAACAACAAGTATTTTGTCGAAGCAGTGGAAGTTTCTTTGGATG 120
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TCAACAAAAGCTGCTGTTAGAACAAGTATTTTGTCGAAGCAGTGGAAGTTTCTTTGGAGG 120
Query 121 CGGCTACCAAAACTTGAGTACCACGATGACATTAAAATTTATATTCTCTATATGCGGGGT 180
||| ||||||||||||||| |||||||||||||||| ||||| |||| ||| |||||
Sbjct 121 CGGATACCAAAACTTGAGTTTCACGATGACATTAAAAACTATATACTCTCCATGAGGGGT 180
Query 181 GGGAGTAGAAGTAGAACCGATTCTATT-CTGTTAGAAAAAAGCCAGAGGATGTGGCGTTT 239
| || ||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 181 ----G-AG-AGTAGAACCGATTCT-TTACTGTTAGAAGGAAGCCAGAGGATGTGGCGTTT 233
Query 240 TATTGATAAGAATCTGCCATTACATAGCTCTCCCGTAATAGAGAGTTTGCGACTTACGAT 299
|||||| | |||||||||||||||| ||||||||||||||||||| ||| | |||||| |
Sbjct 234 TATTGACATGAATCTGCCATTACATTGCTCTCCCGTAATAGAGAGCTTGAGTCTTACGTT 293
Query 300 ATACAACGAACTATTTCAACCTGAAAG-TATTAAT-TTGTGGGTTGAAATTGCAGTTTCT 357
|||||| |||||||||||||||| ||| |||| || ||||||||||||||||||||||||
Sbjct 294 ATACAATGAACTATTTCAACCTG-AAGATATT-ATATTGTGGGTTGAAATTGCAGTTTCT 351
Query 358 CGTTGTG-TTAAGGAGCTAAGCGTTAGATTTTCTCCTTTCAAGGGAAAACGTGATGCATT 416
||||||| | || |||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct 352 CGTTGTGCTCAA-GAGCTAAGCGTTAGCTATTCTCCTTACAAGGGAAAACGTGATGCATT 410
Query 417 ACTGCCGACTACCTTGTATACTTGCAAATCACTCGTGACATTGAAACTAAGAGAAAACAT 476
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 411 ACTGCCGACTAGCTTGTATACTTGCAAATCACTCGTGACATTGAAACTAAGAGACAACAT 470
Query 477 TCTCGTGGATGTTCCTCATGTTTTTTGCCTCCCATCCTTGAAAACTTTGCACCTT-TCAC 535
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 471 TCTCGTGGATGTTCCTCATGTTTTTTGCCTCCCCTCCTTGAAAACTTTGCACCTTGT-AC 529
Query 536 ATGTGACATACGCAGATGAAGAATCTCTTCAACGGCTTTTGTCTAATTGCTTTGTTTTGG 595
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GTATGACATACGCAGATGAAGAATCTCTTCAACGGCTTTTGTCTAATTGCTTTGTTTTGG 589
Query 596 AAGATCTGGTTGTGGAACGACGTGTAGGTGACAATGTCAGAAAT-TTCGCTGTTATCATC 654
||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 590 AAGATCTGGTTGTGGAACGACGTGTAGGTGACAATGTGAGAAATGTTT-CTGTTATCATC 648
Query 655 CCGTCATTGCTTAGTTTATCCTTTGAGATTTTGGGTCAATGTTCTTCGGAAGAGTATGTG 714
|| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 649 CCATCATTGCTTAGTTTATCTTTTGAGATTTTGGGTCAATGTTCTTCGGAAGGGTATGTG 708
Query 715 ATACATACTCCTTCTTTGAAGTATTTCAAAGCTAGAGATTTTGGTGAGTGTTCCACATGT 774
||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 709 ATACATACTCCTTCTTTGAAGAATTTCAAAGCTAAAGATTTTGGTAAGTGTTCCACATGT 768
Query 775 TTGATATTGAACATGCCTAAGCTGGAGGAGGTATTTGTTTCCACTGCTGGTCACAATATC 834
||||||||||| ||||||||||||||||||| || | | |||||||||||| |||||||
Sbjct 769 TTGATATTGAATATGCCTAAGCTGGAGGAGGCATATATCGCCACTGCTGGTCGCAATATC 828
Query 835 AAGAAGCTTCTTGAATCTGTCACATATGTCAAGCGTCTTTCATTGTTCATACCAGACAAC 894
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 829 AAGAAGCTTCTTGAATCTTTCACATATGTCAAGCGTCTTTCATTGTTCATACTAAACAAC 888
Query 895 AATGCAGAGGCTTTCACTGCTCTATATGGTGATGT-GAT-T-GTCTTCAATCAGCTTGA- 950
||||||||||||||||||||| ||||||||| || ||| | ||||| |||||||||||
Sbjct 889 AATGCAGAGGCTTTCACTGCTGTATATGGTGGTGACGATGTTGTCTTTAATCAGCTTGAG 948
Query 951 ACATCTGACGTTTATCATCTGG-GAAGCATATTGTTCCAAGTTACTTTACTGGTTGCTCA 1009
| |||||| |||||||||| | | |||||||| ||||||||||| |||||||||||||
Sbjct 949 A-ATCTGAAGTTTATCATCCGTAGC-GCATATTGGTCCAAGTTACTATACTGGTTGCTCA 1006
Query 1010 TAGCTTCTCCCAAACTTCGAAACTTGGAGTTCAATGATC-AATTCTCAAGTG-ATGGTAT 1067
||||||||||||||||||||||||||||||||||||| | |||| ||| ||| |||||||
Sbjct 1007 TAGCTTCTCCCAAACTTCGAAACTTGGAGTTCAATGAACCAATT-TCACGTGGATGGTAT 1065
Query 1068 GGATACACTGGTTTTCTGGGAGCAAATGATTACTAGTGTTCCTCAAT 1114
||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 1066 A-ATACACTGGTTTTCTGGGAGCAACTGAT-ACTTGTGTTCCTCAAT 1110
Score = 283 bits (153), Expect = 2e-75
Identities = 187/203 (92%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 1288 AATATGGACAAGATCAGTGGGATTTCCGATGATGTATTGCTAGTAAAGATTCTATCGTTT 1347
||||||||||||||| ||||| ||||||| |||| |||||||||||| ||||||||||||
Sbjct 1402 AATATGGACAAGATCTGTGGGGTTTCCGAAGATGAATTGCTAGTAAAAATTCTATCGTTT 1461
Query 1348 CGTCCAACGAAAGTTGCTGTAAGCACAAGTGTTTTGTCTAAGCAATGGAAGTATCTTCGG 1407
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1462 CTTCCAACGAAAGTTGCTGTAAGCACAAGTGTTTTGTCTAAGCAATGGAAGTATCTTTGG 1521
Query 1408 AAGCGGGTGCTAAAACTTGAGTACGATGATACTGAGTGTAAAACTAAACCGTCTAAATCA 1467
||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct 1522 AAGCGGGTGCTAAAACTTGAGTACGATGACACCGAGTGCAAAACTAAATCGTCTAAATCA 1581
Query 1468 TCACATAAGAGGTTCCGGTGTTT 1490
| ||||||||||||| ||||
Sbjct 1582 -CG--TAAGAGGTTCCGGCGTTT 1601
Score = 193 bits (104), Expect = 4e-48
Identities = 124/134 (93%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 1139 TCAAGTGGTTAGGTAACGGTGATTCCATAGAAGGGAAAGATCTGGCGACATTTATTTTGA 1198
|||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1106 TCAATTGGTTAGGTAACCATGATTCCATAGAAGGGAAAGCTCTGGCGACATATATTTTGA 1165
Query 1199 GAAACTCTTGCCAGTTAAAGACTGCAACAATTTCGATCGGACAAGGACAAAACAAGCTTG 1258
|| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1166 GAGAGTCTTGCCAGTTAAAGACTGCAACAATTTCGATCGGACAAGGACAAAAGAAGCTTG 1225
Query 1259 AGATAGAGAAGGAG 1272
|||| |||| ||||
Sbjct 1226 AGATGGAGAGGGAG 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5