BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56420.1 Length=1673 Score E Sequences producing significant alignments: (Bits) Value Ahg950305 jgi|Araly1|950305|scaffold_802192.1 1962 0.0 > Ahg950305 jgi|Araly1|950305|scaffold_802192.1 Length=1316 Score = 1962 bits (1062), Expect = 0.0 Identities = 1237/1321 (94%), Gaps = 13/1321 (1%) Strand=Plus/Plus Query 101 TTTGTGAAAGAATTGTGTAACCTAAATGGTTAGTTATAGAGATAGGCTTAGTCAGTTACC 160 ||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 1 TTTGTGACA-AATTGTGTAATCTAAATGGTTAGTTATAGGGATAGGCTTAGTCAGTTACC 59 Query 161 AGATGATTTCCTTTTACAGATATTATCATGGCTTCCAACAAAAGATGTTTTAGTGACGAG 220 |||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 60 AGATGATTTCCTCTTACAGATATTATCATGGCTTCCAACAAAAGATGTTATGGTGACGAG 119 Query 221 TCTTTTGTCAAAACGATGGCGGTTTCTTTGGACATTAGTCCCTAGGCTCAACTATGATCT 280 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 TCTTTTGTCGAAACGATGGCGGTTTCTTTGGACATTAGTCCCTAGGCTCAATTATGATCT 179 Query 281 AAGGCTTCATGATAATACATGTCCAAGGTTTTCACAGTTTGTAGATAGGTCTTTGTTGCT 340 |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || Sbjct 180 AAGGCTTCATGATAATACATATCCAAGGTTTTCACAGTTTGTTGATAGGTCTTTGTTACT 239 Query 341 GCACAAGGCTCCGACTTTGGAGAGTTTGAATATCAAG-ATTGGTTCGATATGTTTTACTG 399 ||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||| | Sbjct 240 ACACAAGGCTCCGACTTTGGAGAGTTTGAATATC-AGTATTGGTTCGCTATGTTATACCG 298 Query 400 CAGAGAAAGATGTTGGTGTATGGGTTAGAATAGGTGTAGACCGCTTTGTGCGTGAACTGA 459 |||||||||||||||| |||||||||||||| || ||||||||||| ||||||| |||| Sbjct 299 CAGAGAAAGATGTTGGGGTATGGGTTAGAATTGGGGTAGACCGCTTCATGCGTGAGCTGA 358 Query 460 GTGTTAGTTATTGTTCTGGTGAAGAGCCTATTAGATTGCCTAAGTGTTTGTTTACTTGTT 519 | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 359 ATATCAGTTATTGTTCTGGTGAAGAGCCTATTAGATTGCCTAAGTGCTTGTTTACTTGTA 418 Query 520 CAACGCTTGCGGTTCTGAAACTCGAAAACATAACTCTTGAAGATGCTTCTTGTTATGTTT 579 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 419 CAACGCTTGCGGTTCTGAAACTCGAAAACATAAGTCTTGTTGATGCTTCTTGTTATGTTT 478 Query 580 GCTTCCAGT-CGCTCAAGACTTTGCACCTTTTAGATGTGAAGTATTTAGATGACCAGTCA 638 ||||||| | || ||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 479 GCTTCCAATCCG-TCAAGACTTTGCACCTTCTAGATGTGAAGTATTTAGATGACCATTCA 537 Query 639 CTTCCTAGGATTATATCTAGCTGTTCTAGTCTTGAAGATTTGGTTGTGCAAAGATGCCCT 698 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 538 CTTCCTCGGATTATATCCAGCTGTTCTAGTCTTGAAGATTTGGTTGTGCAAAGATGCCCT 597 Query 699 GGTGACAATGTTAAAGTCGTTACTGTGACTGCGCCTA-GTTTAAAAACGT-TATCTTTGC 756 |||||||| |||||||||||| || | ||||| || | ||||||| || | ||||||||| Sbjct 598 GGTGACAACGTTAAAGTCGTTTCTATTACTGCTCC-ATGTTTAAAGAC-TCTATCTTTGC 655 Query 757 ATAAATCGTCTCAAGCTTTTGAAGGAGATGATGATGGGTTCTTGATAGATACTCCTAAAC 816 |||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||| | Sbjct 656 ATAAATCGTCACAAGCTTTTGAGGGAGATGATGATGGGTTCTTGATAGATGCCCCTAGAT 715 Query 817 TGAAGCGTGTAGACATTGAAGACTATTGGGGTGGATTTTGTTACATTGAGAACATGCCTG 876 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 716 TGAAGCGCGTAGACATTGAAGACTATTGGGGTGGCTTTTGTTACATTGAGAACATGCCTG 775 Query 877 AGGTGGTGGAGGCAAATGTCGATGTTATTTATAAAAATACGGAGAAACTTCTGGGATCTA 936 ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 776 AGGTGGTAGAGGCAAATGTCGATGTTATTTACAAAAATACAGAGAAACTTCTGGGATCTC 835 Query 937 TCACCTCTGTCAAGCGCCTTGCGCTATGTCTGATCACTTCAGATGCTGCTTATCCCGCTG 996 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 836 TTACCTCTGTCAAGCGCCTTGCGCTATGTCTGATCACTTCAGATGCTGCTTATCCCACTG 895 Query 997 GTACTATCTTCTCTCAGCTTGTTCATCTAGAACTATGCACATGTGCGCCACGATGGTGGG 1056 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 896 GTACCGTCTTCTCTCAGCTTGTTCATCTGGAACTATGCACATGTGCGCCACGATGGTGGG 955 Query 1057 ATTTACTTACCAGACTGATTGAAGATTCACCTAAACTACGAGTTCTTAAACTCCGCCAGA 1116 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 956 ATTTACTTACCAGACTGTTTGAAGATTCACCTAAACTAAGAGTTCTTAAACTCCGCCAGA 1015 Query 1117 AACATATTCGACGTGCCCCTAGTCCCCGTGCTAGTTGGAAGCAACCTG---CTCTTCCCA 1173 |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| Sbjct 1016 AACATATTCGACGTGCCCCTAGTCCCCGGGCTTGTTGGAAGCAACCTGTTTCTCTTCCCA 1075 Query 1174 AGTGTTTGTTATTTCATCTTGAGACCTTCAAGTGGGAACTATATGAAGGATCACAAAAGC 1233 |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1076 AGTGTTTGTTATTTCACCTTGAGACGTTCAAGTGGGAACTATACGAAGGATCACAAAAGC 1135 Query 1234 AGAAAGAAGTAGCGACATTTATCTTAAAACACGCTATTCGATTGAAGACAGCTATTATCT 1293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 AGAAAGAAGTAGCGACATTTATCTTAAAACACGCTATTCGATTGAAGACAGCTATTATCT 1195 Query 1294 CTCCAAAACCCACCAGTACTCTGCTAGAGAAACATGAAATGCTCAAGGATTTGTCATCCT 1353 ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1196 CTCCAAAGCCCACCAGTACTCTGCTAGAGAAACATGAGATGCTCAAGGAGTTGTCATCCT 1255 Query 1354 CACCGCGTGGTTCCAGTACATGTGAGCTCTTGTTCGACTGAGAGAA-GGAAGAAGAAATG 1412 | |||||||||||||||||||| |||||||||||||||||| | || ||||||||||||| Sbjct 1256 CGCCGCGTGGTTCCAGTACATGCGAGCTCTTGTTCGACTGAAAAAAAGGAAGAAGAAATG 1315 Query 1413 A 1413 | Sbjct 1316 A 1316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62734633515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5