BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56420.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950305 jgi|Araly1|950305|scaffold_802192.1 1962 0.0
> Ahg950305 jgi|Araly1|950305|scaffold_802192.1
Length=1316
Score = 1962 bits (1062), Expect = 0.0
Identities = 1237/1321 (94%), Gaps = 13/1321 (1%)
Strand=Plus/Plus
Query 101 TTTGTGAAAGAATTGTGTAACCTAAATGGTTAGTTATAGAGATAGGCTTAGTCAGTTACC 160
||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTTGTGACA-AATTGTGTAATCTAAATGGTTAGTTATAGGGATAGGCTTAGTCAGTTACC 59
Query 161 AGATGATTTCCTTTTACAGATATTATCATGGCTTCCAACAAAAGATGTTTTAGTGACGAG 220
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 60 AGATGATTTCCTCTTACAGATATTATCATGGCTTCCAACAAAAGATGTTATGGTGACGAG 119
Query 221 TCTTTTGTCAAAACGATGGCGGTTTCTTTGGACATTAGTCCCTAGGCTCAACTATGATCT 280
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TCTTTTGTCGAAACGATGGCGGTTTCTTTGGACATTAGTCCCTAGGCTCAATTATGATCT 179
Query 281 AAGGCTTCATGATAATACATGTCCAAGGTTTTCACAGTTTGTAGATAGGTCTTTGTTGCT 340
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 180 AAGGCTTCATGATAATACATATCCAAGGTTTTCACAGTTTGTTGATAGGTCTTTGTTACT 239
Query 341 GCACAAGGCTCCGACTTTGGAGAGTTTGAATATCAAG-ATTGGTTCGATATGTTTTACTG 399
||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||| |
Sbjct 240 ACACAAGGCTCCGACTTTGGAGAGTTTGAATATC-AGTATTGGTTCGCTATGTTATACCG 298
Query 400 CAGAGAAAGATGTTGGTGTATGGGTTAGAATAGGTGTAGACCGCTTTGTGCGTGAACTGA 459
|||||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||||
Sbjct 299 CAGAGAAAGATGTTGGGGTATGGGTTAGAATTGGGGTAGACCGCTTCATGCGTGAGCTGA 358
Query 460 GTGTTAGTTATTGTTCTGGTGAAGAGCCTATTAGATTGCCTAAGTGTTTGTTTACTTGTT 519
| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 ATATCAGTTATTGTTCTGGTGAAGAGCCTATTAGATTGCCTAAGTGCTTGTTTACTTGTA 418
Query 520 CAACGCTTGCGGTTCTGAAACTCGAAAACATAACTCTTGAAGATGCTTCTTGTTATGTTT 579
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 419 CAACGCTTGCGGTTCTGAAACTCGAAAACATAAGTCTTGTTGATGCTTCTTGTTATGTTT 478
Query 580 GCTTCCAGT-CGCTCAAGACTTTGCACCTTTTAGATGTGAAGTATTTAGATGACCAGTCA 638
||||||| | || ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 479 GCTTCCAATCCG-TCAAGACTTTGCACCTTCTAGATGTGAAGTATTTAGATGACCATTCA 537
Query 639 CTTCCTAGGATTATATCTAGCTGTTCTAGTCTTGAAGATTTGGTTGTGCAAAGATGCCCT 698
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTCCTCGGATTATATCCAGCTGTTCTAGTCTTGAAGATTTGGTTGTGCAAAGATGCCCT 597
Query 699 GGTGACAATGTTAAAGTCGTTACTGTGACTGCGCCTA-GTTTAAAAACGT-TATCTTTGC 756
|||||||| |||||||||||| || | ||||| || | ||||||| || | |||||||||
Sbjct 598 GGTGACAACGTTAAAGTCGTTTCTATTACTGCTCC-ATGTTTAAAGAC-TCTATCTTTGC 655
Query 757 ATAAATCGTCTCAAGCTTTTGAAGGAGATGATGATGGGTTCTTGATAGATACTCCTAAAC 816
|||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||| |
Sbjct 656 ATAAATCGTCACAAGCTTTTGAGGGAGATGATGATGGGTTCTTGATAGATGCCCCTAGAT 715
Query 817 TGAAGCGTGTAGACATTGAAGACTATTGGGGTGGATTTTGTTACATTGAGAACATGCCTG 876
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 TGAAGCGCGTAGACATTGAAGACTATTGGGGTGGCTTTTGTTACATTGAGAACATGCCTG 775
Query 877 AGGTGGTGGAGGCAAATGTCGATGTTATTTATAAAAATACGGAGAAACTTCTGGGATCTA 936
||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 776 AGGTGGTAGAGGCAAATGTCGATGTTATTTACAAAAATACAGAGAAACTTCTGGGATCTC 835
Query 937 TCACCTCTGTCAAGCGCCTTGCGCTATGTCTGATCACTTCAGATGCTGCTTATCCCGCTG 996
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 836 TTACCTCTGTCAAGCGCCTTGCGCTATGTCTGATCACTTCAGATGCTGCTTATCCCACTG 895
Query 997 GTACTATCTTCTCTCAGCTTGTTCATCTAGAACTATGCACATGTGCGCCACGATGGTGGG 1056
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 896 GTACCGTCTTCTCTCAGCTTGTTCATCTGGAACTATGCACATGTGCGCCACGATGGTGGG 955
Query 1057 ATTTACTTACCAGACTGATTGAAGATTCACCTAAACTACGAGTTCTTAAACTCCGCCAGA 1116
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 956 ATTTACTTACCAGACTGTTTGAAGATTCACCTAAACTAAGAGTTCTTAAACTCCGCCAGA 1015
Query 1117 AACATATTCGACGTGCCCCTAGTCCCCGTGCTAGTTGGAAGCAACCTG---CTCTTCCCA 1173
|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 1016 AACATATTCGACGTGCCCCTAGTCCCCGGGCTTGTTGGAAGCAACCTGTTTCTCTTCCCA 1075
Query 1174 AGTGTTTGTTATTTCATCTTGAGACCTTCAAGTGGGAACTATATGAAGGATCACAAAAGC 1233
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1076 AGTGTTTGTTATTTCACCTTGAGACGTTCAAGTGGGAACTATACGAAGGATCACAAAAGC 1135
Query 1234 AGAAAGAAGTAGCGACATTTATCTTAAAACACGCTATTCGATTGAAGACAGCTATTATCT 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGAAAGAAGTAGCGACATTTATCTTAAAACACGCTATTCGATTGAAGACAGCTATTATCT 1195
Query 1294 CTCCAAAACCCACCAGTACTCTGCTAGAGAAACATGAAATGCTCAAGGATTTGTCATCCT 1353
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1196 CTCCAAAGCCCACCAGTACTCTGCTAGAGAAACATGAGATGCTCAAGGAGTTGTCATCCT 1255
Query 1354 CACCGCGTGGTTCCAGTACATGTGAGCTCTTGTTCGACTGAGAGAA-GGAAGAAGAAATG 1412
| |||||||||||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 1256 CGCCGCGTGGTTCCAGTACATGCGAGCTCTTGTTCGACTGAAAAAAAGGAAGAAGAAATG 1315
Query 1413 A 1413
|
Sbjct 1316 A 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5