BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56430.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495733 jgi|Araly1|495733|fgenesh2_kg.8__1549__AT5G56430.1 1382 0.0
Ahg497428 jgi|Araly1|497428|fgenesh2_kg.431__1__AT5G56430.1 488 3e-137
> Ahg495733 jgi|Araly1|495733|fgenesh2_kg.8__1549__AT5G56430.1
Length=1083
Score = 1382 bits (748), Expect = 0.0
Identities = 976/1083 (90%), Gaps = 28/1083 (3%)
Strand=Plus/Plus
Query 6 AAATATCAGTGATTTGCCTAACGATTTGCTGGTGAAGATTTTGTCATTAATTCCGAT-AA 64
|||||| ||||||||| |||||||||||||||| |||||||||| ||||||||| | ||
Sbjct 6 AAATATAAGTGATTTGTCTAACGATTTGCTGGTTAAGATTTTGTTATTAATTCC-TTCAA 64
Query 65 AAGTTGCTGCGTCTACAAGTCTTTTGTCCAAACGATGGGGTTCTGTTTGGAAATTGATTC 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AAGTTGCTGTGTCTACAAGTCTTTTGTCCAAACGATGGGGTTCTGTTTGGAAATTGATTC 124
Query 125 CGACGCTTGACTATGACGGTACATATAGTGCTGCAGCTTTAGAGTTTTTCGGAAAGTT-T 183
||| |||||| ||||||| ||||||||||||| |||| | ||||||| ||||||| || |
Sbjct 125 CGAAGCTTGATTATGACGATACATATAGTGCTTCAGCATCAGAGTTTATCGGAAACTTAT 184
Query 184 ---CAC-----ACCCTTGTGGCTTTACGCT-TTATGAAATTGACCATTGAGGATGTTCAT 234
||| |||||||||| |||||| | | |||||| |||||||||| ||||||| |
Sbjct 185 ACACACATGAAACCCTTGTGGTTTTACG-TCTCATGAAAGTGACCATTGACGATGTTCCT 243
Query 235 TCGACAACTTGTTTCCGGTCCGTCAAGAATTTATCTCTTCTAGATGTAAAGTTCTCAAGC 294
||||||||||||||||||||| |||||| ||| |||||||||||||| ||| |||||
Sbjct 244 TCGACAACTTGTTTCCGGTCCCTCAAGACTTTGTCTCTTCTAGATGTGTTCTTCACAAGC 303
Query 295 GATAAAACCGTTGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGCAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 304 GATAAAACCGTTGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGGAC 363
Query 355 CGATGGGGCG-CTGACAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTT 413
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CGATGGGGCGGC-GAAAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTT 422
Query 414 AAACATCCGCTACACAGTAGGGGGTTATCACAATCCAAAAACTGATCATGGATTTGTGAT 473
||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 423 AAAGATCCGCTACAGAGTAGGGGGTTATCACGATCCAAAAAATGATCATGGATTTGTCAT 482
Query 474 CAATGCTCCTTCTTTAAAGCATTTAGATATTGTTGATCATTTTAGTGGGTTTTGCTCATT 533
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 483 CAATGCTCCTTCTTTAAAGTATTTAGATATTGTTGATCATTTTAGTGGGTTTTATTCTTT 542
Query 534 AGTGAATATGCCCGAGCAATTGGATGCAGAAATCCACCTTAGACATAT-TGATTCTGAGA 592
||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 543 AGTGAATATGCCCGAGCAATTGGATGCAGAAATCCACGTTAGACAT-TGTGATTCTGAGA 601
Query 593 AGCTTCT-GGAAAGTCTTACCTCGTCTAAAAAACTTTCCTTGTGTTTAAAACCACAAACG 651
|||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 602 CGCTTCTAGGATA-TCTTACCTCGTCTAAAAAACTTTCCTTATGTTTAAAACCACAAATG 660
Query 652 GGTTCATATCCGGGAGGAGACTTTGACCAGCTCGTGTGTCTAGAGCTATGTGTTATGTGC 711
||||||||||||| ||| |||||||| ||||| |||| ||| || |||||||||||||||
Sbjct 661 GGTTCATATCCGGAAGGCGACTTTGATCAGCTTGTGTCTCTTGACCTATGTGTTATGTGC 720
Query 712 TCCTTAGATTGGTTGAATCTTATCCTCAGACGTTCACCTAAACTCCGATCTCTCAAACTC 771
|||||||||||||||||||||||||| || |||||||||||||||||| |||||| ||||
Sbjct 721 TCCTTAGATTGGTTGAATCTTATCCTAAGCCGTTCACCTAAACTCCGAGCTCTCAGACTC 780
Query 772 TACCAATCAAGAGAGAGAAACTGGAGCTGCAGGAATTCCA-AACATGTCCGTACTAAATG 830
|||||||||||||||||| | |||||||| ||||||| | || |||||||||| || ||
Sbjct 781 TACCAATCAAGAGAGAGAGGCGGGAGCTGCCGGAATTCTAGAA-ATGTCCGTACCAAGTG 839
Query 831 GGAGCAACCCAATTCTGTTCCTGAATGCTTACTTGTGAGTCTCGAAACTGTTAAGTGGAT 890
||||||||| | ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 840 GGAGCAACCGAGTTCTGTTCCTGAATGCTTACTTGTGAGTCTCAAAACTGTTGAGTGGAT 899
Query 891 TTTGTACAAAGGGACACAAGAAGAGAAGGATGTGGTGAAGTATTTGTTAAAGAATGGAAA 950
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 900 TTTGTACAAAGGGACACAAGAAGAGAAGGATGTGGTAAAGTATTTGTTAGAGAATGGAAA 959
Query 951 CTTCATAAAGACTATGAGTATTCGATTCTCATCAGTAGTCACGTTGGAAGAGAGAATCCA 1010
||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| | |
Sbjct 960 CTTCATAAAAACTATGAGTATTGGATTCTCATCAGTAATCACGTTGGAAGAGAGAAACAA 1019
Query 1011 CATACCAAT-GGAGTTTGAGT-TCATGGGAAGGATTAATTCCAGCAGATGTCAGCTTTCA 1068
|||| | | ||||||||||| | ||| ||||| | | | || |||||||||||||||
Sbjct 1020 AATAC-AGTTGGAGTTTGAGTCT-ATGCCAAGGAGT--T-CTAGAAGATGTCAGCTTTCA 1074
Query 1069 TTC 1071
|||
Sbjct 1075 TTC 1077
> Ahg497428 jgi|Araly1|497428|fgenesh2_kg.431__1__AT5G56430.1
Length=753
Score = 488 bits (264), Expect = 3e-137
Identities = 355/398 (89%), Gaps = 10/398 (3%)
Strand=Plus/Plus
Query 678 CCA-GCTCGTGTGTCTAGAGCTATGTGTTATGTGCTCCTTAGATTGGTTGAATCTTATCC 736
||| ||| |||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCACGCTTGTGTCTCTTGACCTATGTGTTATGTGCTCCTTAGATTGGTTGAATCTTATCC 415
Query 737 TCAGACGTTCACCTAAACTCCGATCTCTCAAACTCTACCAATCAAGAGAGAGAAACTGGA 796
| || |||||||||||||||||| |||||| |||||||||||||||||||||| | |||
Sbjct 416 TAAGCCGTTCACCTAAACTCCGAGCTCTCAGACTCTACCAATCAAGAGAGAGAGGCGGGA 475
Query 797 GCTGCAGGAATTCCA-AACATGTCCGTACTAAATGGGAGCAACCCAATTCTGTTCCTGAA 855
||||| ||||||| | || |||||||||| || ||||||||||| | |||||||||||||
Sbjct 476 GCTGCCGGAATTCTAGAA-ATGTCCGTACCAAGTGGGAGCAACCGAGTTCTGTTCCTGAA 534
Query 856 TGCTTACTTGTGAGTCTCGAAACTGTTAAGTGGATTTTGTACAAAGGGACACAAGAAGAG 915
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 TGCTTACTTGTGAGTCTCAAAACTGTTGAGTGGATTTTGTACAAAGGGACACAAGAAGAG 594
Query 916 AAGGATGTGGTGAAGTATTTGTTAAAGAATGGAAACTTCATAAAGACTATGAGTATTCGA 975
||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 595 AAGGATGTGGTAAAGTATTTGTTAGAGAATGGAAACTTCATAAAAACTATGAGTATTGGA 654
Query 976 TTCTCATCAGTAGTCACGTTGGAAGAGAGAATCCACATACCAAT-GGAGTTTGAGT-TCA 1033
|||||||||||| |||||||||||||||||| | | |||| | | ||||||||||| | |
Sbjct 655 TTCTCATCAGTAATCACGTTGGAAGAGAGAAACAAAATAC-AGTTGGAGTTTGAGTCT-A 712
Query 1034 TGGGAAGGATTAATTCCAGCAGATGTCAGCTTTCATTC 1071
|| ||||| | | | || ||||||||||||||||||
Sbjct 713 TGCCAAGGAGT--T-CTAGAAGATGTCAGCTTTCATTC 747
Score = 466 bits (252), Expect = 2e-130
Identities = 310/338 (92%), Gaps = 4/338 (1%)
Strand=Plus/Plus
Query 187 ACCCTTGTGGCTTTACGCT-TTATGAAATTGACCATTGAGGATGTTCATTCGACAACTTG 245
|||||||||| |||||| | | |||||| ||||||||| ||||||| ||||||||||||
Sbjct 16 ACCCTTGTGGTTTTACG-TCTCATGAAAGGGACCATTGACGATGTTCCTTCGACAACTTG 74
Query 246 TTTCCGGTCCGTCAAGAATTTATCTCTTCTAGATGTAAAGTTCTCAAGCGATAAAACCGT 305
|||||||||| |||||| ||| |||||||||||||| ||| ||||||||||||||||
Sbjct 75 TTTCCGGTCCCTCAAGACTTTGTCTCTTCTAGATGTGTTCTTCACAAGCGATAAAACCGT 134
Query 306 TGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGCACCGATGGGGCG- 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 135 TGAGAGGCTTTTGTCTTGTTTCCCTATTCTTGAAACATTGGTTGTGGACCGATGGGGGGG 194
Query 365 CTGACAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTTAAACATCCGCT 424
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 195 C-GAAAATGTGAAGACTTTCGCAATTTGTGTGCCATCGTTGCAGAGCTTAAAGATCCGCT 253
Query 425 ACACAGTAGGGGGTTATCACAATCCAAAAACTGATCATGGATTTGTGATCAATGCTCCTT 484
||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct 254 ACAGAGTAGGGGGTTATCACGATCCAAAAAATGATCATGGATTTGTCATCAATGCTCCTT 313
Query 485 CTTTAAAGCATTTAGATATTGTTGATCATTTTAGTGGG 522
|||||||| ||||||||||||||||||||||||| |||
Sbjct 314 CTTTAAAGTATTTAGATATTGTTGATCATTTTAGGGGG 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5