BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56440.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950308 jgi|Araly1|950308|scaffold_802195.1 638 0.0
> Ahg950308 jgi|Araly1|950308|scaffold_802195.1
Length=767
Score = 638 bits (345), Expect = 0.0
Identities = 587/701 (84%), Gaps = 27/701 (4%)
Strand=Plus/Plus
Query 605 AGAGATTAATAGCCATAGACTG-TCGCTCTCAAGTTCCTGGAGATGATGTTGGGTTTGTG 663
||||||||| | ||||||| | || |||||||||||| ||||||||||||||||||||
Sbjct 62 AGAGATTAACGGTCATAGACGGTTC-CTCTCAAGTTCCCGGAGATGATGTTGGGTTTGTT 120
Query 664 ATCAAAGCTCCGTCTTTAAAGTCGTTGACG-TTGTTGAACTTTTCTCCCCATAGTGGGTT 722
||||| ||||| |||||||||||||| ||| ||| | ||| | | |||| | |
Sbjct 121 ATCAAGGCTCCTTCTTTAAAGTCGTTAACGATTGCT-AACAAGT-T-----TAGTTGCTG 173
Query 723 CCGTTCTTTAGTAAAAATGCCAGACCTCGTGAAGGCTTCTATCAAGGTTCGACATGGTGA 782
| ||| ||||| | ||||| ||||||||||||| | ||||||| ||| |||||||||
Sbjct 174 CTATTCATTAGTGAGTATGCCCTACCTCGTGAAGGCCTATATCAAGCTTCAACATGGTGA 233
Query 783 TTCTAAG-ATGTTTATGGG-TTGTCTTACCTCAACCAAACGCCTTGCCTTATGTCTACAA 840
||||||| || |||| ||| ||| |||| |||| | |||| | || |||||||| | |||
Sbjct 234 TTCTAAGAAT-TTTAAGGGATTG-CTTAACTCAGCTAAACACGTTTCCTTATGTTTGCAA 291
Query 841 CCACCACTGGATTCATGTCCTATAGGCGTCTTCAATCAGCTAGTGTCTCTAAGTCTTTGT 900
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 292 CCACCAATGGATTCATGTCCTATAGGCATCTTCAATCAGCTAGTGTCTCTAAATCTTTGT 351
Query 901 ACATGCTCTTTAGGTTGGTGTCGTCTTATACTCA-ACCATACACCTAAACTCCGAGTTCT 959
|| |||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 352 ACGTGCTCTTTAGATTGGTGTCGTCTTATACTCAGA-CATGCACCTAAACTCCGAGTTCT 410
Query 960 CAGATTCGAAC-AAAGACAAGCAAAATT-TTAT-CAATTGCTAGATCCT---CTTAAGAG 1013
||||||||| | ||| | ||| | || || | ||| | | ||||| || ||||
Sbjct 411 CAGATTCGAGCTAAA-AGAAGTTAGGTTGTT-TCCAA-AACAAAATCCTCCACTCCAGAG 467
Query 1014 ATGTTGCAGCAGTTCCGTAGATGTTCAAACTCAATGGGAGCAGCCGAGTTCTGTTCCT-A 1072
|||||||| |||||| |||||||| ||| |||| | |||||||| ||||||||||||| |
Sbjct 468 ATGTTGCATCAGTTCTGTAGATGTCCAAGCTCAGTTGGAGCAGCTGAGTTCTGTTCCTCA 527
Query 1073 AGTGTTTGATTTCGAGTCTTGAAACTGTTGAGTGGATTGATTACAAAGGAAGAGAAGTAG 1132
| ||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||
Sbjct 528 A-TGTTTGATTTCGAGTCTTGAAACTGTTGAGTGGATTGGTTACAAAGGAACACAAGCAG 586
Query 1133 AGAAAAAAGTGGTGATGTATTTGCTAGAAAACTCTCGACAGCTTAAGACAATGGCTATTA 1192
|||||||||||||||||||||| ||||| ||||| | |||||| ||||||||||||||||
Sbjct 587 AGAAAAAAGTGGTGATGTATTTACTAGAGAACTCACCACAGCTAAAGACAATGGCTATTA 646
Query 1193 GATCCCTGAAATCGACCAATGATAACGAGAAACTCAAGATGCTGCAAGAGCTATCGTCCA 1252
||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| |
Sbjct 647 GATCCTTGAAATCGACCAAAGATAGTGAGAAACTCAAGATGCTGCAAGAGCTGTCGTCTA 706
Query 1253 TACACAGGATTTGTACTAAATGTGGGCTTTCCTTCACCTGA 1293
|| |||| | || |||||| ||||||| |||||||||
Sbjct 707 CGCAGAGGAGCTCAACCAAATGTCGGCTTTCGTTCACCTGA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5