BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56450.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495734 jgi|Araly1|495734|fgenesh2_kg.8__1550__AT5G56450.1 2388 0.0
> Ahg495734 jgi|Araly1|495734|fgenesh2_kg.8__1550__AT5G56450.1
Length=1546
Score = 2388 bits (1293), Expect = 0.0
Identities = 1477/1561 (95%), Gaps = 31/1561 (2%)
Strand=Plus/Plus
Query 10 CTTTATCTCGTTGTGGCTTGAGTTCGAATCCACGCAAGGAACC--A--A-----ATCATC 60
||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1 CTTTATCTCGTTGTGGCTTGAGTTCGAATCCACGCAAGGAACCAAAGCATCTCCATCATC 60
Query 61 TCCAGCAAAGATATCTCTTTCTTTCTTTTTCTGATCCTTAATCGTCGCTTGAGGTTTTGG 120
|||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 TCCAACAAAGATATCTCTGTCTTTCTTTTTGTGATTCTTAATCGTCGCTTGAGGTTTTGG 120
Query 121 TTTTCTCTTTATGGGAATTTCTAGGGGTTTCTAAATTTTCCCTGTTTCTTTGGAATCTAC 180
|||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 121 TTTTCTCTTTATGGGAATTTCTAGGGTTTTCTTGATTTCCCCTGTTTCTTTGGAATCTAC 180
Query 181 AAGTTGTTTCGTT--C-CCAATATAATGTCAGATTGAGAAATTCGAATCAAACCCATTTC 237
||||||||||||| | || | |||||||| ||||||| |||||||||| |||||||||
Sbjct 181 AAGTTGTTTCGTTCCCGCCGAGATAATGTCGGATTGAGCAATTCGAATCGAACCCATTT- 239
Query 238 CCA-ATTTGTTGTTTTTCATTCAAAGATCGAAACTTTGTGTTTATTGACTGCATTTTCAA 296
||| ||||| |||||||| |||||||||||| |||||||| | || | ||| |
Sbjct 240 CCAGATTTGGTGTTTTTCGTTCAAAGATCGAGACTTTGTG-----T--CT---TCTTCGA 289
Query 297 AGATGTGTATTTCAAAAGAAGACGAAGAAGATCCATCAAGAAATCGAAGGAATCAATCAC 356
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 290 AGATGTGCATTTCAAAAGAAGAC---GAAGATCCATCAAGAAATCGAAGGAATCAATCAC 346
Query 357 CATTATCGCTTCCTCAAACTCTGAAACATTTCCAAAAAGATTTGCTTGCTGGTGCTGTAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CATTATCGCTTCCTCAAACTCTGAAACATTTCCAAAAAGATTTGCTTGCTGGTGCTGTAA 406
Query 417 TGGGAGGTGTTGTTCACACGATCGTGGCACCAATCGAAAGAGCCAAGCTTTTATTGCAGA 476
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 407 TGGGAGGTGTTGTTCACACGATCGTGGCACCAATCGAAAGAGCGAAGCTTTTACTGCAGA 466
Query 477 CACAAGAGAGCAATATCGCAATCGTTGGAGACGAAGGTCACGCAGGGAAGAGAAGGTTTA 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 467 CACAAGAGAGCAATATCGCAATCGTTGGAGACGATGGTCACGCAGGGAAGAGAAGGTTTA 526
Query 537 AAGGAATGTTTGATTTTATCTTCCGTACTGTTAGAGAAGAAGGTGTTTTATCTTTATGGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AAGGAATGTTTGATTTTATCTTCCGTACTGTTAGAGAAGAAGGTGTTTTATCTTTATGGA 586
Query 597 GAGGCAATGGAAGCAGTGTGCTCCGTTATTATCCTTCTGTTGCTCTTAATTTCTCTCTTA 656
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 587 GAGGCAATGGAAGCAGTGTGCTTCGTTATTATCCTTCAGTTGCTCTTAATTTCTCTCTTA 646
Query 657 AGGATCTATATAGAAGCATTCTTAGAAACAGTAGCTCTCAAGAGAATCATATCTTCTCTG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGGATCTATATAGAAGCATTCTTAGAAACAGTAGCTCTCAAGAGAATCATATCTTCTCTG 706
Query 717 GTGCATTAGCTAATTTCATGGCTGGTTCTGCTGCTGGTTGTACTGCTTTGATTGTTGTTT 776
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 707 GTGCATTAGCTAATTTCATGGCTGGTTCTGCAGCTGGTTGTACTGCTTTGATTGTTGTTT 766
Query 777 ATCCGCTTGATATCGCGCATACTCGTTTAGCTGCTGACATTGGGAAGCCTGAAGCTCGTC 836
||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 767 ATCCGCTAGATATCGCACACACTCGATTAGCTGCTGACATTGGGAAGCCTGAAGCTCGTC 826
Query 837 AGTTCAGAGGAATCCATCATTTCTTGTCAACGATTCATAAGAAAGATGGGGTTAGAGGAA 896
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 827 AGTTTAGAGGAATCCATCATTTCTTGTCGACGATTCATAAGAAAGATGGGGTTAGAGGAA 886
Query 897 TCTATAGAGGCTTACCTGCGTCTCTACATGGTGTGATTATTCACCGTGGCTTATACTTTG 956
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 887 TCTATAGAGGCTTACCTGCGTCTCTACATGGCGTGATTATTCACCGTGGCTTGTACTTTG 946
Query 957 GAGGGTTTGATACAGTTAAGGAGATTTTCTCAGAGGATACTAAACCTGAGTTGGCATTGT 1016
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 947 GAGGGTTTGATACGGTTAAGGAGATTTTCTCAGAGGATACTAAACCAGAGTTGGCACTGT 1006
Query 1017 GGAAGAGATGGGGTTTGGCTCAAGCTGTGACTACATCTGCTGGTTTGGCTTCTTACCCGT 1076
|||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1007 GGAAGAGATGGGTTTTGGCGCAAGCTGTGACTACATCTGCTGGATTGGCTTCTTACCCGT 1066
Query 1077 TGGATACAGTTCGTAGACGGATAATGATGCAATCCGGGATGGAGCATCCGATGTACCGTA 1136
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1067 TGGATACAGTTCGTAGACGGATAATGATGCAATCCGGAATGGAGCATCCAATGTACCGTA 1126
Query 1137 GCACATTGGATTGTTGGAAGAAGATATATAGGAGTGAAGGGTTGGCTTCGTTTTACCGTG 1196
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1127 GCACATTGGATTGTTGGAAGAAGATATATAGGAGTGAAGGGTTGGCTTCTTTTTACCGTG 1186
Query 1197 GAGCACTCTCTAATATGTTTAGGAGCACCGGTTCGGCTGCTATCTTGGTTTTTTATGATG 1256
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1187 GAGCACTCTCTAATATGTTTAGGAGCACGGGTTCGGCTGCTATCTTGGTTTTTTATGATG 1246
Query 1257 AAGTGAAGAGGTTCTTGAATTGGGGAGGGATCTAAGATTAACAAGCTGAGAGGTAAGCCT 1316
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1247 AAGTGAAGAGGTTCTTGAATTGGGGAGGGATCTAAGATTAAAAAGCTGAGAGGTAAGCTT 1306
Query 1317 TGTCTATCCAAATTAGAGACAGAAGAAGAATGATTTTTCATTTTGTTACTACACCTTAAC 1376
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1307 TGTCAATCCAAATTAGAGACAGAAGAAGAATGATTATTCATTTTGTTACTACACCTTAAC 1366
Query 1377 ATGGA--CATATGTAGAGAGAAAGCTTT-AGGTGATAATATTCGTTTTACCGTATTCAGT 1433
| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1367 AAGGAGACATATGTAGAGAGAAAGCTTTTAGGTGATAATATTCGTTTTACCGTATTCGGT 1426
Query 1434 TTTGAGGATTTGGCTGAAACACTATGCATCTTGATTCTTTTCTTTTTGTTATAGACTTTG 1493
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1427 TTTGAGGATTTGGCTGGAACACTATGCATCTTGATTCTTTTCTTCTTGTTATAGACTTTG 1486
Query 1494 TGTGTATGAGGAAAGAAAAAAGAAGGAATCTATTTTGTAAATAAAAGACATGGATTGGTC 1553
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1487 TGTGTATGAGGGAAGAAAAA-GAAGGAATCCATTTTGTAAATAAAAGACATGGATTGGTC 1545
Query 1554 T 1554
|
Sbjct 1546 T 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5