BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56452.1
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495735 jgi|Araly1|495735|fgenesh2_kg.8__1551__AT5G56452.2 704 0.0
> Ahg495735 jgi|Araly1|495735|fgenesh2_kg.8__1551__AT5G56452.2
Length=627
Score = 704 bits (381), Expect = 0.0
Identities = 550/627 (88%), Gaps = 29/627 (5%)
Strand=Plus/Plus
Query 562 ATATGATTGTGATTAATGTCCCATCTCTGAAGTACTTGAGCTTAGTAGATTTCAATGG-- 619
||| ||||||||| ||||| ||||||||||||||||||| ||| | ||||||| ||||
Sbjct 8 ATAAGATTGTGATCAATGTACCATCTCTGAAGTACTTGAACTTTGAAGATTTCTATGGTC 67
Query 620 -TGACTCT-TATTTGTGTGAGAATATGCCTGAGGTGATTGAGGCAATTGTTAAAGTTGTT 677
||||| | |||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 68 ATGACT-TGTATTTGTGTGAGAATATGCCTGAGTTTATGGAGGCAATTGTTAAAGTTGTT 126
Query 678 CATAAAAGTCCCATGAAGCTACTGGGATCTCTTCCATCAGTCAAGAATCTCTATTTATG- 736
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 127 TATAACAGTCCCAAGAAGCTACTGGAATCTCTTCCATCAGTCAAGAATCTCTATTTATGT 186
Query 737 TCTAA---C-T---AA--TTCAGTGCTTCAACACCAAATAGGGA-TTTATCATCTTGTCC 786
|| || | | || |||| || |||| |||| || ||| ||||||||||||| |
Sbjct 187 TC-AACTGCTTCAAAACCTTCAATGATTCAGCACCGTAT-TGGATTTTATCATCTTGTTC 244
Query 787 ATTTGGAGCTATGTCAAGACTCTCCAGGGTGGTGGGGTCTGCTTACTTGGATGCTTGATA 846
|||||||| |||||||| |||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 245 ATTTGGAGATATGTCAACACTCTCCAGGGTGGTGGGATCTACTTTCTTGGATGCTTGATA 304
Query 847 ATTCTCCTAAACTACAAGTTCTCAAGCTCGGA-AAGTGCAAAGAACG---TTGTTTCATA 902
|||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct 305 GTTCTCCTAAACTACAAGTTCTCAAGCTC-AACAAGTGCAAAGAACGCCCTTGTTTCACA 363
Query 903 TCGTCCATTGAA-AGTCACTGGAGAGGACCAATTTCAGTTCCAGAATGTTTGCGGTTACA 961
|||| ||| ||| | | |||||||||||| | ||||||||| |||||||||||||| ||
Sbjct 364 TCGTTCATCGAACA-TTGCTGGAGAGGACCGAGTTCAGTTCCTGAATGTTTGCGGTTGCA 422
Query 962 TCTGTCTACTTTTGAGTGGAAATATTACAATGGAAGAGATGAGGAGAAGAAAATAGTGGC 1021
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 423 TCTCTCTACTTTTGAGTGGAAATATTACAATGGAAGAGATGAGGAGAAGAAAGTAGTGGC 482
Query 1022 GTACATCCTAAAGAATGCAAGACAGCTAAAGACTGCGGCTTTCTCTGTTCAAAGAGTGTT 1081
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 483 GTACATCTTAAAGAACGCAAGACAGCTAAAGACCGCGGCTTTCTCTGTTCAAAGAGTGTT 542
Query 1082 TCCCATGAAAGAGAGATTTCAGAAACAT-AAGGAGGTTG-TTTCTCTGCATAGAGCTTCA 1139
| ||| | ||||| ||||||| |||| | |||||| ||| ||||||||| ||||||||||
Sbjct 543 TACCACGGAAGAGCGATTTCAAAAAC-TCAAGGAG-TTGGTTTCTCTGCCTAGAGCTTCA 600
Query 1140 AGCTCATGTAAACTTATGTTGGATTGA 1166
|||||||||||||||||||||||||||
Sbjct 601 AGCTCATGTAAACTTATGTTGGATTGA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44756304558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5