BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56460.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331952 jgi|Araly1|331952|fgenesh1_pm.C_scaffold_8001295 1938 0.0
> Ahg331952 jgi|Araly1|331952|fgenesh1_pm.C_scaffold_8001295
Length=1260
Score = 1938 bits (1049), Expect = 0.0
Identities = 1155/1208 (96%), Gaps = 0/1208 (0%)
Strand=Plus/Plus
Query 400 ATGGGTAACTGTTGGTGTAGATTTGAGCCCTTAAACCACAGAGTTTCTGCAAACGCTAAA 459
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTAATTGTTGGTGTAGATTTGAGCCCTTAAATCACAGAGTTTCTGCAAACGCTAAA 60
Query 460 TCAGAGTCACCAAAAGAACAGAGTCCAACAGTAGAAGATAAACATATTAAGGAAGTTCAA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGAGTCACCAAAAGAACAGAGTCCAACAGTAGAAGATAAACATATTAAGGAAGTTCAA 120
Query 520 AAGCTGCCATCAAATCCAAAAGAAGTAGAAGATCTAAGACGTGACTCAGCAGCGAATCCT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTGCCATCAAATCCAAAAGAAGTAGAAGATCTAAGACGTGACTCAGCAGCGAATCCT 180
Query 580 CTTATAGCTTTCACATACGAAGAGCTTAAGAACATTACAAGTAATTTTAGACAAGACAGA 639
|| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 181 CTGATAGCTTTCACATACGATGAGCTTAAGAACATTACAGGTAATTTCAGACAAGACAGA 240
Query 640 GTTCTTGGTGGTGGTGGATTTGGAAGTGTCTACAAAGGGTTTATAAAAGAGGATTTGGGT 699
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 241 GTTCTCGGTGGTGGTGGATTTGGAAGTGTTTACAAAGGTTTTATAAAAGAGGATTTGGGT 300
Query 700 GATCAAGAAGTTCCTGAACCACTTCCTGTTGCCGTTAAAGTTCATGATGGTGATAATAGC 759
|||||| |||||||| |||||||||||||||| |||||||||||||| || |||||||||
Sbjct 301 GATCAACAAGTTCCTCAACCACTTCCTGTTGCTGTTAAAGTTCATGACGGCGATAATAGC 360
Query 760 TTTCAGGGTCACAGAGAATGGCTGGCAGAGGTGATATTCTTGGGGCAGCTTTCACATCCA 819
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTCAGGGCCACAGAGAATGGCTGGCAGAGGTGATATTCTTGGGGCAGCTTTCACATCCA 420
Query 820 AACTTAGTGAAATTGATCGGTTATTGCTGTGAGGATAATCACCGAGTGCTAATCTATGAG 879
||||||||||||||||||||||||||||| |||||||||||| | |||||||| || |||
Sbjct 421 AACTTAGTGAAATTGATCGGTTATTGCTGCGAGGATAATCACAGGGTGCTAATTTACGAG 480
Query 880 TACATGGCTCGTGGTAGCGTGGAGAACAATCTTTTCTCAAGAGTGTTGCTTCCTCTTTCA 939
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 481 TACATGGCTCGTGGTAGCGTGGAGAATAATCTTTTCTCAAGAGTGTTACTTCCTCTTTCA 540
Query 940 TGGGCAATAAGAATGAAGATTGCTTTCGGAGCTGCGAAAGGACTTGCCTTTCTTCATGAA 999
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TGGGCAATTAGAATGAAGATTGCTTTTGGAGCTGCGAAAGGACTTGCCTTTCTTCATGAA 600
Query 1000 GCAAAGAAACCCGTCATTTATCGCGATTTCAAAACTTCGAACATTCTTCTAGATATGGAT 1059
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 601 GCAAAGAAACCCGTCATTTATCGCGATTTCAAAACCTCCAACATTCTTCTAGATATGGAA 660
Query 1060 TACAACGCCAAATTATCTGATTTTGGACTTGCTAAAGACGGTCCTGTAGGAGATAAATCC 1119
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 TACAATGCCAAATTATCTGACTTCGGACTTGCTAAAGACGGTCCTGTAGGAGATAAATCC 720
Query 1120 CATGTTTCCACTCGTATAATGGGAACTTATGGCTATGCAGCTCCTGAATACATCATGACA 1179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CATGTTTCCACTCGCATAATGGGAACTTATGGCTATGCAGCTCCTGAATACATCATGACA 780
Query 1180 GGGCATTTGACACCGGGGAGTGATGTGTATAGTTTCGGTGTAGTTCTGTTAGAGCTTCTT 1239
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 GGTCATTTGACACCGGGGAGTGATGTGTATAGCTTCGGTGTAGTTCTGTTAGAGCTTCTA 840
Query 1240 ACGGGAAGAAAATCATTAGACAAATCACGGCCAACACGTGAGCAAAACCTCATAGATTGG 1299
|| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 841 ACTGGAAGAAAATCATTAGACAAGTCACGGCCTACGCGTGAGCAAAACCTCATAGATTGG 900
Query 1300 GCTCTTCCATTGTTGAAGGAGAAGAAGAAAGTCTTGAACATTGTAGACCCAAAAATGAAC 1359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 901 GCTCTTCCATTGTTGAAGGAGAAGAAGAAAGTCTTGAACATTGTAGACCCAAGAATGAAC 960
Query 1360 TGTGAGTATCCGGTTAAAGCGGTTCAAAAGGCTGCAATGTTAGCTTACCATTGCCTGAAC 1419
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGTGAATACCCGGTAAAAGCGGTTCAAAAGGCTGCAATGTTAGCTTACCATTGCCTGAAC 1020
Query 1420 CGTAACCCGAAGGCTCGGCCTTTAATGCGTGACATTGTTGATTCTTTGGAGCCTCTTCAG 1479
|| |||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1021 CGGAACCCGAAGGCTAGGCCTTTAATGCGGGATATTGTGGATTCTTTGGAGCCTCTTCAG 1080
Query 1480 GCCACAGAAGAGGAGGCTTTACTAGTCCCTCCTGTTCAGAAAGCAGTAATTACTATTATC 1539
||||||||||| |||||||||||||||||| ||||||||||||||||| |||| || |||
Sbjct 1081 GCCACAGAAGAAGAGGCTTTACTAGTCCCTACTGTTCAGAAAGCAGTAGTTACCATAATC 1140
Query 1540 GACGAAATGCCTaagaatggattgaagaaagttgaagaattgaagaaggttgaagaagtg 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 GACGAAATGCCTAAGAATGGATTGAAGAAAGTTGAAGAATTGAAGAAGGTTGAAGAATTG 1200
Query 1600 aagaaggt 1607
||||||||
Sbjct 1201 AAGAAGGT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5