BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56480.1

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331954 jgi|Araly1|331954|fgenesh1_pm.C_scaffold_8001297           494    2e-139


> Ahg331954 jgi|Araly1|331954|fgenesh1_pm.C_scaffold_8001297
Length=351

 Score =  494 bits (267),  Expect = 2e-139
 Identities = 316/340 (93%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAGAACAGATATTTTGTCAGTTTTTAGTCGTAATGATGTTGTTGTCATCATCTCAA  60
            |||||||||||||| ||||  |||||| |||||||||| |||||||||||||||||||||
Sbjct  1    ATGAAAGAACAGATCTTTTACCAGTTTCTAGTCGTAATCATGTTGTTGTCATCATCTCAA  60

Query  61   ATTCAGGGGGAGAGATGTAATGATTCAGGCATCGAAGTTCTGAGGGGATGTCCAGATTCT  120
            |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct  61   ATTCAGGGGGAGAGATGTGATGATTCAGGCATAGAATTTCTGAGGGGATGTCCAGATTCT  120

Query  121  ATCGACAAGGAGCTGCCAACTCCGCCAAGACCATCCCAAGGTTGTTGCACTCTTGTCCGA  180
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct  121  ATCGACAAGGAGCTGCCAACTCCACCAAGACCATCCCAAGATTGTTGCACTCTTGTCCGA  180

Query  181  ATCATCGGGATGGAATGTGTATGCGAAGTCATCAATAAG-GAAATCGAAGCCGCCATTGA  239
            |||||||||||| ||||  |||||||||||||||||||| ||| ||||||||| ||||||
Sbjct  181  ATCATCGGGATGAAATGCATATGCGAAGTCATCAATAAGAGAA-TCGAAGCCGTCATTGA  239

Query  240  TATGCAAAAGCTAGTCAATGTCGCGGCTGCTTGTGGCCGTCCACTTGCTCCTGGCTCACA  299
            ||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||
Sbjct  240  TATGCAAAAGCTAGTCAATGTCGCGGCTGCTTGTGGCAGCCCTCTTGCTCCTGGTTCACA  299

Query  300  ATGCGGAAGTTACCTAGTTCCCGGTGGCATGATTAGACAT  339
             |||||||| ||||||||||||||||||||| | ||||||
Sbjct  300  TTGCGGAAGCTACCTAGTTCCCGGTGGCATGGTGAGACAT  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12133477302


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5