BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56520.1
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950318 jgi|Araly1|950318|scaffold_802205.1 490 1e-137
> Ahg950318 jgi|Araly1|950318|scaffold_802205.1
Length=346
Score = 490 bits (265), Expect = 1e-137
Identities = 303/322 (94%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 30 AAGACATGGTGTTCCGTGGCGACACGGTGGTGTCCGTAGCTCATATATCGGCTGAGATTT 89
|||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 16 AAGACATGGTGTTCCGTGGCGACACGGTGGTGTCCGTAGCTCATTTATCGGCGGATATTT 75
Query 90 TTCAGCGATTACGGTGGATTCCGCCGTCGGATCGAATCAGCAGCGGAGAGATGTTACAAC 149
|||||||||| || | ||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 76 TTCAGCGATTTCGCTTAATTCCACAATCGGATCGAATCAGCAGCGGAGAGATGTTGCAAC 135
Query 150 TCGTTTGTTGTTTTCCGCTTCAGCAACTGGGTCGATTCGTTTTATGGTTCTGGAACTATA 209
||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||
Sbjct 136 TCGTTTGTTGTTTTCCGCTACAGCAATTGGGTCGATTCGTTTTGTGGTTCTGGAACCATA 195
Query 210 TCTGTGTTCCACCTCCGGAGATTTTGTATTTTGATGGTCGTCGTGATGATGACGATGATG 269
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 196 TCTGTGTTCCACCTCCAGAGATTTTATATTTTGATGGTCGTCGTGATGATGACGATGATG 255
Query 270 GTTATGGATCATCTTCGTCGTCTTCGAATGTTACTCATCATCATAATTACTATCATCTTC 329
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GTTATGGATCATCTTCGTCTTCTTCGAATGTTACTCATCATCATAATTACTATCATCTTC 315
Query 330 ATTTGGAGTGACCAAAGTTCCG 351
|||||||||||||||| |||||
Sbjct 316 ATTTGGAGTGACCAAATTTCCG 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5