BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56530.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495743 jgi|Araly1|495743|fgenesh2_kg.8__1559__AT5G56530.1 2316 0.0
> Ahg495743 jgi|Araly1|495743|fgenesh2_kg.8__1559__AT5G56530.1
Length=1671
Score = 2316 bits (1254), Expect = 0.0
Identities = 1440/1528 (94%), Gaps = 19/1528 (1%)
Strand=Plus/Plus
Query 15 ATTATAAAGGTGTTAGCTTTTTCAATACTTCACACCAAATAAAGCCTTTCTCGTT-AGAT 73
|||||||||||| |||||||||||| |||||||||||||||||||||||| | || ||||
Sbjct 1 ATTATAAAGGTGCTAGCTTTTTCAACACTTCACACCAAATAAAGCCTTTC-CCTTAAGAT 59
Query 74 AAGTAACAAGCATTTACTCAAAAGCTTCTTCCTTtct----cactctctctctctctctg 129
|| | | ||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 60 AACTGAGAAGCA-TTACCCAAAAGCTTCTTCCTTTCTCACACACTCTCTCTCTCTCTCTG 118
Query 130 tctcttctTGTTTGCTTTAGACTTAAGAT--G-GCTGCGGCGCATTTTAGTAAGGAGAGG 186
||||||||| || |||||||||||||||| | ||||| ||||||||||| |||||||||
Sbjct 119 TCTCTTCTTCTTGGCTTTAGACTTAAGATGGGTGCTGCAGCGCATTTTAGCAAGGAGAGG 178
Query 187 GTCTTCAGAGGGTTTCTGGTTTGGTTCTGCTTTTGGGGACTGATGTCTCTAACATGCGCT 246
|| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 179 GTTTTCAGAGGGTTTCTGTTTTGGTTCTGCTTTTGGGGACTGCTCTCTCTAACATGCGCA 238
Query 247 GGGAGACTCAGTGTTTCAAGGCAGAATTTTGAAGTGCACAAACACTTGAATCGATTGAAT 306
||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||
Sbjct 239 GGGAGACTCAGTGTTTCAAAGCAGAATCTTGAAGTGCATAAACACTTGAATCGATTGAAT 298
Query 307 AAACCAGCCGTTAAGAGCATTCAGAGTCCAGATGGTGACATAATAGACTGTGTTCACATA 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 AAACCAGCCGTTAAGAGCATTCAGAGTCCAGATGGTGACATAATAGACTGTGTTCATATA 358
Query 367 TCGAAGCAACCAGCTTTTGATCACCCTTTCCTCAAAGATCACAAGATTCAGATGGGACCT 426
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 359 TCTAAGCAACCAGCTTTTGATCATCCTTTCCTCAAAGATCACATGATTCAGATGAAACCT 418
Query 427 AGTTACACTCCAGAATCGCTGTTTGGTGAGAGCAAAGTGTCTGAGAAACCAAAAGAGAGT 486
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 419 AGTTACTCTCCAGAATCGTTGTTTGATGAGAGCAAAGTGTCTGAGAAACCAAAAGAGAGA 478
Query 487 GTCAATCCTATTACACAGTTATGGCACCAGAACGGAGTT-TGTTCTGAAGGGACAATACC 545
|||||||| || || ||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 479 GTCAATCCAATAACTCAGTTATGGCACCAGAATGGA-TTGTGTTCTGAAGGGACAATACC 537
Query 546 AGTGAGGAGGACAAAGAAAGAGGATGTCTTGAGGGCGAGTTCTGTTAAACGGTATGGTAA 605
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 538 AGTGAGGAGAACAAAGAAAGAGGATGTCTTGAGGGCGAGTTCTGTTAAACGTTATGGGAG 597
Query 606 GAAGAAGCACCTTTCTGTTCCTCTGCCTCGATCTGCTGATCCTGATCTCATTAACCAAAG 665
||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 598 GAAGAAGCACCGGTCTGTTCCTCTGCCCCGATCTGCTGATCCTGATCTTATCAACCAAAG 657
Query 666 TGGTCATCAGCACGCTATAGCTTATGTGGAAGGAGGCAAGTTTTACGGGGCAAAGGCGAC 725
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGGTCATCAGCACGCCATAGCTTATGTGGAAGGAGGCAAGTTTTACGGGGCAAAGGCGAC 717
Query 726 AATAAATGTATGGGAACCCAAAGTGCAAAGCTCTAATGAGTTTAGCTTGTCTCAGTTATG 785
||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 718 AATAAATGTATGGGAACCCAAAGTGCAAAACTCTAATGAGTTCAGCTTATCTCAGTTATG 777
Query 786 GATTCTTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAGGTTAG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GATTCTTGGAGGTTCTTTTGGTCAAGATCTCAACAGCATTGAAGCTGGTTGGCAGGTTAG 837
Query 846 TCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGGACGAGCGATGCTTA 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCCAGATTTATATGGCGATAACAACACAAGGCTTTTCACATACTGGACGAGCGATGCTTA 897
Query 906 TCAAGCTACGGGCTGCTACAATCTCCTTTGTTCGGGTTTCATACAAATCAACAGTCAAAT 965
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 898 TCAAGCTACTGGCTGCTACAATCTCCTTTGTTCGGGTTTTATACAAATCAACAGTCAAAT 957
Query 966 AGCAATGGGAGCAAGTATCTCTCCGGTATCTGGCTTCCATAACCCGCAATACGATATAAG 1025
|||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 958 AGCAATGGGAGCCAGTATTTCTCCTGTATCTGGCTTCCATAACCCACAATATGATATTAG 1017
Query 1026 TATTACCATTTGGAAGGATCCAAAAGAAGGGCACTGGTGGATGCAGTTTGGAGACGGGTA 1085
||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1018 TATCACCATTTGGAAGGATCCTAAAGAAGGTCACTGGTGGATGCAGTTTGGGGACGGGTA 1077
Query 1086 TGTGTTGGGATACTGGCCAAGCTTTCTATTCTCTTACTTAGCAGATAGTGCATCAATAGT 1145
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1078 TGTGTTGGGATACTGGCCAAGCTTTCTATTCTCATACTTAGCTGATAGTGCATCAATAGT 1137
Query 1146 AGAGTGGGGTGGAGAAGTAGTGAACATGGAAGAAGATGGTCACCACACAACCACGCAAAT 1205
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 AGAATGGGGTGGAGAAGTAGTGAACATGGAAGAAGATGGTCACCACACAACCACACAAAT 1197
Query 1206 GGGAAGCGGTCAATTTCCGGATGAAGGGTTCACGAAAGCGAGTTACTTCAGGAACATTCA 1265
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGGAAGCGGTCAATTTCCTGATGAAGGGTTCACGAAAGCGAGTTACTTCAGGAACATTCA 1257
Query 1266 AGTCGTTGATAGCTCTAATAATCTGAAAGAACCAAAAGGGCTCAACACTTTCACTGAGAA 1325
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1258 AGTCGTTGATAGCTCTAACAATCTGAAAGAACCAAAAGGTCTCAACACTTTCACTGAGAA 1317
Query 1326 ATCGAATTGCTATGATGTTGAGGTTGGTAAGAATGATGATTGGGGACATTATTTTTACTA 1385
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1318 ATCGAATTGCTATGATGTTGAGGTTGGTAAGAATGAAGATTGGGGACATTATTTTTACTA 1377
Query 1386 TGGAGGTCCTGGAAGAAACCCTAATTGTCAGTAGAAGTT-AA-A---GAAAGAAGATGAT 1440
||||||||||||||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 1378 TGGAGGTCCTGGAAGAAACCCTAATTGTCAGTAGAAGATGAACAAAAGAAAGAAGATGAT 1437
Query 1441 TGAAGTTGTAGAGGAACACTTGTGCTGGATTTTTTC-TTATTATGTGAAGTGTGAAAATA 1499
||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1438 TGAAGATGTAGAGGAACACTTGTGCTGGATTTTT-CATTATTATGTGAAGTGTGAAAATA 1496
Query 1500 TCGTTTTTGTTGATTTTTCCTTACACTT 1527
||||||| ||||||||||||||||||||
Sbjct 1497 TCGTTTTAGTTGATTTTTCCTTACACTT 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5