BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56540.1

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950320 jgi|Araly1|950320|scaffold_802207.1                        322    2e-87


> Ahg950320 jgi|Araly1|950320|scaffold_802207.1
Length=223

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 204/218 (94%), Gaps = 3/218 (1%)
 Strand=Plus/Plus

Query  80   AAA-AATACTAACAATGGAGGCAATGAAGATGAAGCTTTACGTGGTGGTTTTGGTGGCAG  138
            ||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| 
Sbjct  7    AAACAATACTAACAATGGAGGCAATGAAGATGAAGCTTTTCGTGACGGTTTTGGTGGCAA  66

Query  139  TGATAGCGTTCTCTACAGTTCACCAGACGGTTGCAGCGGTTGACGCTCCCGCGCCTAGCC  198
            |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||
Sbjct  67   TGATAGCGTTCTCTACCGTTCAACAGACGGTTGCAGTGGTTGACGCTCCCGCGCCGAGCC  126

Query  199  CTACCTCCGATGCTTCCTCATTTATCCCTACTTTCTTCGCCTCCGTAGCGGTGATGGCCT  258
            ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  127  CTACCTCCGATGCTTCCTCATTTATCCCTACTTTCTTTGCCTCCGTGGCGGTGATGGCCT  186

Query  259  TTGGATT-CTTCTTTTAAGAAGTTTCTTCTTTGCTTTT  295
            |||| || || |||||||||||||||||||||||||||
Sbjct  187  TTGGGTTTCT-CTTTTAAGAAGTTTCTTCTTTGCTTTT  223



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17856815652


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5