BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56544.1

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950326 jgi|Araly1|950326|scaffold_802213.1                        104    8e-22


> Ahg950326 jgi|Araly1|950326|scaffold_802213.1
Length=513

 Score =  104 bits (56),  Expect = 8e-22
 Identities = 98/116 (84%), Gaps = 12/116 (10%)
 Strand=Plus/Plus

Query  256  GGAATGCTAGTGTTGAATCATGCGGATGAACGAGTACTAGGACTTCACTTCACTTGCTAC  315
            |||| ||||||||||||||||||||||||||||| |||||||||||||| |    |||||
Sbjct  243  GGAAAGCTAGTGTTGAATCATGCGGATGAACGAGCACTAGGACTTCACT-C----GCTAC  297

Query  316  GATTTGCGTTTTTTGCAGACTATTGAGAAAGTATGTACCAATTTGTTACCAAGCGT  371
            ||||| | |     | ||||| ||||| |||||| |||||||||||||||||||||
Sbjct  298  GATTTTC-T-----G-AGACTGTTGAGGAAGTATTTACCAATTTGTTACCAAGCGT  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22111291860


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5