BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56550.1

Length=901
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917356 jgi|Araly1|917356|Al_scaffold_0008_2107                    782    0.0  


> Ahg917356 jgi|Araly1|917356|Al_scaffold_0008_2107
Length=519

 Score =  782 bits (423),  Expect = 0.0
 Identities = 494/526 (94%), Gaps = 14/526 (3%)
 Strand=Plus/Plus

Query  152  ATGTTCAAAGAGATGAATCTGAATCTGAAGCAAATGGGCAACATGATCTATGAAGATCCA  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTCAAAGAGATGAATCTGAATCTGAAGCAAATGGGCAACATGATCTATGAAGATCCA  60

Query  212  ACAAGGATCCAAGAAGAAGAAGACATTGTTCAAGAAGTTTCAACAACATTCTCTGATGAA  271
            ||||||||||||||||||||   ||||||||||| |||||||| |||||||||||| |||
Sbjct  61   ACAAGGATCCAAGAAGAAGA---CATTGTTCAAGGAGTTTCAAGAACATTCTCTGAGGAA  117

Query  272  GAAGATA-ACTCATCATCTTGTTCATTATCTTCTTCCATGTGTTCTG-AT-T--TT-A-C  324
            ||||| | | ||||||||||||||||||||||||||||||||||||  || |  || | |
Sbjct  118  GAAGA-AGATTCATCATCTTGTTCATTATCTTCTTCCATGTGTTCTTCATCTGATTTAAC  176

Query  325  AGAGgatgatgatgatgatgatgTTTCTTCATCTTCTTCAAATGGACCTCTTGAAGATCT  384
            |||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||
Sbjct  177  AGAGGATGATGATGATGATG-T-TT-CTTCATCTTCTTCTAATGGACCTCTTGAAGATCT  233

Query  385  CTCTGACCTCATGTCACACCTCCCTATCAAGAGGGGATTATCAAAGTTCTATGAAGGAAA  444
            |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| 
Sbjct  234  CTCTGACCTCATGTCACATCTCCCAATCAAGAGGGGATTATCAAAGTTCTATGAAGGAAG  293

Query  445  ATCTCAATCATTCACATCACTAGGAAATGTTAAAAGCCTTGAAGATCTTATGAAGAGAGG  504
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  294  ATCTCAATCATTCACATCACTAGCAAATGTTAAAAGCCTTGAAGATCTTATGAAGAGAGG  353

Query  505  GTTTAAAAGTAGAAACTATGGAGCAAAAAGAAAGTCATCTAGGAGTACTGGAGGGATTTT  564
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  GTTTAAAAATAGAAACTATGGAGCAAAAAGAAAGTCATCTAGGAGTACTGGAGGGATTTT  413

Query  565  AGATCAAAGCTACAAAAGGGTTTTTAGTCCTAAAGCTACAATCTCCAAGAAACCCAACAG  624
            |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| 
Sbjct  414  AGATCAAAGCTATAAAAGGGTTTATAGTCCTAGAGCTACAATCTCCAAGAAACCCAACAA  473

Query  625  AACACCTTCCTCTGTTCTCTCTTGTCTAGCCAGAAGAAGACATTAG  670
            |||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct  474  AACACCTTCCTCTGCTCTCTCTTGTCTTGCCAGAAGAAGACCTTAG  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33395675292


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5