BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56570.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495746 jgi|Araly1|495746|fgenesh2_kg.8__1562__AT5G56570.1 1749 0.0
> Ahg495746 jgi|Araly1|495746|fgenesh2_kg.8__1562__AT5G56570.1
Length=1410
Score = 1749 bits (947), Expect = 0.0
Identities = 1272/1419 (90%), Gaps = 62/1419 (4%)
Strand=Plus/Plus
Query 10 CTTTTCTTCTTCCTTTGCACACACGTCCCAAAACAGAGAGCAA-AATTCACCAGAATCAT 68
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1 CTTTTCTTCTTCCTTTGCACACACGTCCCAAAACAGAGAG-AAGAATTCACCAGAATCAT 59
Query 69 GGAGAGCTGCCAGAAG--AAA-C--AAA-AATTGGAGACACCAACAGAGCTCAGTGATAT 122
|||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 60 GGAGAGCTGCCAGAAGAAAAAGCAAAAAGAATTGGAGACACCAACAGAGCTCAGTGATAT 119
Query 123 GCCTGATGACTTAATCTTCAAAATATTCTCG-TTCCTTCCGTTTTTTAAAGAGGATTTAG 181
||||||||| |||||||| || ||||||||| || ||||||||||| |||||||||||||
Sbjct 120 GCCTGATGAATTAATCTTGAAGATATTCTCGCTT-CTTCCGTTTTTCAAAGAGGATTTAG 178
Query 182 CAACACGTTTCATATCAGAATATGGGAAGGGTCTTTGGAATCCAGACCCGAATGCCATAT 241
||||||||||||||||||||||||||||||||| |||||| || || ||||||| ||| |
Sbjct 179 CAACACGTTTCATATCAGAATATGGGAAGGGTCATTGGAAACCGGAGCCGAATGTCATTT 238
Query 242 TTGATGATGAATCACTCGATATGACTTGTATGAGTTTTGTATATGGATCTTTGATGTCCA 301
|||||||| ||||| ||||||||| || | || ||||||||||||||||||||||
Sbjct 239 TTGATGATCAATCAATCGATATGA---GT-T---TT--GTATATGGATCTTTGATGTCCA 289
Query 302 AGGATGCTCAGATTCTAGATAGCTTGCATCTCAAGCTTAGGAAATACTATAT-TGCTTCA 360
|||||||||| |||||||||||||||||||||||||||| || |||||| | |||||||
Sbjct 290 AGGATGCTCAAATTCTAGATAGCTTGCATCTCAAGCTTAACAATTACTAT-TCTGCTTCA 348
Query 361 GATATCAATTTTCTTGTTCAACTTGGGGTTAATCGATCTATGAGAGAGCTGAGAATCGAC 420
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 349 GATATCAATTTTCTAGTTCAACTCGGGGTTAATCGATCTGTGAGAGAGCTGAGAATCGAC 408
Query 421 TTCTTTGGAAAAACCCTAGAATTACCGTGTTGCTTGAGTACCTGCACAACCCTAAAAGTT 480
|| ||||| |||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct 409 TTGTTTGGCAAAACCCTAGAACTGCCTTGTTGCTTGAGTACGTGCACAACCCTAAAAGAA 468
Query 481 TTGGTACTCGATCATTTAAATATCATGTCTGTCCCGGGTTGGTTTCGTTTGCCATCAGTC 540
|||||||||||| |||||| |||| | |||||||| |||||||||||||||||||| ||
Sbjct 469 TTGGTACTCGATAATTTAAGCATCAGGCCTGTCCCGCGTTGGTTTCGTTTGCCATCACTC 528
Query 541 GAAACTCTCCAGCTTTCATCGGTTACCGGGGGCAGCAACTATGTTCCAAGTCTTATAAGA 600
||||||||||| |||||||||||| | || |||| | | || | ||||||||||||||
Sbjct 529 GAAACTCTCCAACTTTCATCGGTTGCAGGAGGCA--AT-TCTGGTGCAAGTCTTATAAGA 585
Query 601 -TTATGCTCTGTTCATGAACGTTTGGTTGTAGACCAAAACAGAAATAAAGATCTGG-T-T 657
|| | ||||||||||||||||||||||||| ||||||||||| || | ||| || | |
Sbjct 586 ATT-TACTCTGTTCATGAACGTTTGGTTGTACACCAAAACAGATATGACGATGTGACTAT 644
Query 658 AAT-A-T--CAATGTGCCTACTTTGAGGAGCTTATCTATCGATAACAAGAGAAGGG--GA 711
||| | | |||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 645 AATCAATATCAATGTGCCTACTTTGAGGAGCTTATCTATCGATAACAGGA-AAGGGATGT 703
Query 712 CATGTGC-CACTCGGTAGCTTTTGGATAAATGTTCCTTCTTTGATGTTTTTGAACATTAA 770
||| || ||| |||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 704 -ATGGGCGCAC-CGGTGGCTTTTGGATAAATGCTCCTTCTTTGATGTTCTTGAACATTAA 761
Query 771 GGATACATTCCA--AACA--ATA-T-TT-GAATCTATGCCTGCGATGATCAAAGCGAATA 823
|||||||||| | ||| ||| | || ||||| |||||||||||||||||| || |||
Sbjct 762 GGATACATTC-AGTAACTGTATAATGTTTGAATCCATGCCTGCGATGATCAAATCGGATA 820
Query 824 TCGAGGTTGCTCATGACCAATCGCAATCTGTGAAGTTCATAGAATCTCTTACCTCAACCC 883
|||||||| ||||| | | | ||||||| ||||||| |||| ||||||||||||| ||
Sbjct 821 TCGAGGTTACTCAT-A--A--C-CAATCTGAGAAGTTCTTAGAGTCTCTTACCTCAATCC 874
Query 884 GACATCTTTGTCTTTGTTCTCCAACTTCAGA-GAATCCATATCCTA-ATGGCACAAAGTT 941
||||||||| ||||||||||||||||||| | || ||||||||||| | | |||||| ||
Sbjct 875 GACATCTTTCTCTTTGTTCTCCAACTTCA-ATGACTCCATATCCTACA-GACACAAAATT 932
Query 942 CTCCAATCTTGTACATCTAAAGCTATGTACATGTTCTGCGGGATGGCAGAATCTACTTGC 1001
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 CCCCAATCTTGAACATCTAAAGCTATGTACATGTTCTGCGGGATGGCAGAATCTACTTGC 992
Query 1002 GTGTATGCTCAATGACGCTCCCAATCTTCGTTCTCTTACTCTTAAGTTGAGACA-AAAAT 1060
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 993 GTGTATGCTCAATGACGCTCCCAATCTTCGATCTCTTACACTTAAGTTGAGACATAAAAA 1052
Query 1061 CCGATGTCAATCCGAAGAA-AGTCTGGGAAAAGCCAACAGTCGTTCCTGAATGTTTATCT 1119
| ||| ||||||||||| | |||||||||| |||||||| |||||||||||| |||||
Sbjct 1053 C-GATATCAATCCGAAGGGCA-TCTGGGAAAAACCAACAGTTGTTCCTGAATGTCTATCT 1110
Query 1120 ACGCGTCTTGAGATCTTGAAATGGAGAGATTATGAAGGCACTGAGCATGAGAAGGATATG 1179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1111 ACGCGTCTTGAGATCTTGAAATGGAGAGATTATGAAGGAACTGAGCATGAGAAGGATATG 1170
Query 1180 GTTGGGTACATACTAGCAAACGCTACTTTTCTACAGAGGGCAACATTCTCAACGAAA-GA 1238
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1171 GTTGGGTACATACTAGCAAACGCTACTTTCCTACAGAGGGCGACATTCTCAACGAAATG- 1229
Query 1239 TAGAAACCAATGTGATTCCAGGTTCAGCGAGTTACAGTCTATGGAGAGAGTTTCAGAGAT 1298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TAGAGACCAATGTGATTCCAGGTTCAGCGAGTTACAGTCTATGGAGAGAGTTTCAGAGAT 1289
Query 1299 ATGTGAGTTTGTGTTTGACTAATGTGACTCTCTTATGTGATGGTGTGTGTCTCTCTAGAA 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 ATGTGAGTTTGTGTTTGACTAATGTGACTCTCTTATGTGATGGTGTGTGTCTCTCTAGAA 1349
Query 1359 GACGCAAAGACGTTCTTAGctttcttcttcctttccctt 1397
||| || ||||||||||||||||||||||||||||||||
Sbjct 1350 GACACAGAGACGTTCTTAGCTTTCTTCTTCCTTTCCCTT 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5