BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56580.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495747 jgi|Araly1|495747|fgenesh2_kg.8__1563__AT5G56580.1 1989 0.0
> Ahg495747 jgi|Araly1|495747|fgenesh2_kg.8__1563__AT5G56580.1
Length=1221
Score = 1989 bits (1077), Expect = 0.0
Identities = 1162/1203 (97%), Gaps = 6/1203 (0%)
Strand=Plus/Plus
Query 31 AAAGaaaaaaaaTGGTGAAGATCAAATCGAACTTGAAGCAGCTTAAGCTCTCCGTTCCAG 90
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AAAG-AAAAAAATGGTGAAGATCAAATCGAACTTGAAGCAGCTTAAGCTCTCCGTTCCAG 78
Query 91 CTCAAGAATCCCCAATCTCTTCCTTCCTGACTGCGAGTGGAACATTTCACGATGGAGATT 150
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 79 CTCAAGAATCCCCAATCTCTTCCTTCTTGACTGCGAGTGGAACGTTTCACGATGGAGATT 138
Query 151 TTCTTCTGAATCAAAAGGGGCTAAGGTTGACGTCAGATGAGAAGCAATCAAGGCAATCTG 210
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 139 TTCTTCTGAATCAAAAGGGGTTAAGGTTGATGTCAGATGAGAAGCAATCAAGGCAATCTG 198
Query 211 ATAGCAAGGAGCTTGATTTCGAAATTACTGCTGAAGACTTAGAGACTGTCAAAGTCATCG 270
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 199 ATAGCAAGGAGCTTGATTTCGAAATTACCGCTGAAGACTTAGAGACTGTGAAAGTCATCG 258
Query 271 GAAAAGGCAGTGGTGGTGTTGTTCAATTAGTTCGTCATAAATGGGTTGGCAAATTCTTTG 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GAAAAGGCAGTGGTGGTGTTGTTCAATTAGTTCGTCATAAATGGGTTGGCAAATTCTTTG 318
Query 331 CTATGAAGGTCATACAGATGAATATACAAGAAGAAATCCGTAAGCAAATTGTTCAGGAGC 390
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 319 CTATGAAGGTCATACAGATGAATATACAAGAGGAGATCCGTAAGCAAATTGTCCAGGAGC 378
Query 391 TTAAAATAAACCAAGCATCATCACAATGTCCACATGTAGTAGTTTGCTACCATTCTTTCT 450
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 379 TCAAAATAAACCAAGCATCATCGCAATGTCCACATGTAGTTGTTTGCTACCATTCTTTCT 438
Query 451 ATCACAATGGAGCCTTTTCGCTTGTGCTTGAATACATGGACCGTGGATCTCTTGCGGATG 510
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 439 ATCACAATGGAGCCTTTTCTCTTGTGCTTGAATACATGGACCGGGGATCTCTTGCGGATG 498
Query 511 TGATTAGACAAGTCAAGACTATTCTTGAACCTTACCTTGCTGTTGTCTGTAAACAGGTTT 570
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TGATAAGACAAGTCAAGACTATTCTTGAACCTTACCTTGCTGTTGTCTGTAAACAGGTTT 558
Query 571 TGCTAGGTCTTGTGTACCTACACAACGAAAGACATGTCATACACAGAGACATTAAGCCAT 630
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 559 TGCTAGGCCTTGTGTACCTGCACAACGAAAGACATGTCATACACAGAGACATTAAGCCTT 618
Query 631 CAAACCTTCTTGTAAACCATAAAGGGGAAGTGAAAATCTCAGATTTTGGTGTAAGTGCAA 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CAAACCTTCTTGTAAACCATAAAGGGGAAGTGAAAATCTCAGATTTTGGTGTAAGTGCAA 678
Query 691 GTCTTGCTAGCTCCATGGGACAGAGGGACACATTTGTTGGAACCTACAACTATATGTCGC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GTCTTGCTAGCTCCATGGGACAGAGGGACACATTTGTTGGAACCTACAACTATATGTCGC 738
Query 751 CTGAGAGGATTAGTGGAAGCACATATGACTACAGCAGTGACATTTGGAGTTTGGGGATGT 810
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 739 CTGAGAGGATCAGTGGAAGCACATATGACTACAGCAGTGACATTTGGAGTTTGGGCATGT 798
Query 811 CAGTGTTAGAATGTGCAATAGGAAGATTTCCTTATTTAGAATCTGAAGATCAGCAAAACC 870
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 799 CAGTGTTAGAATGCGCAATAGGAAGATTCCCTTACTTAGAATCTGAAGATCAGCAAAACC 858
Query 871 CGCCAAGCTTTTATGAACTCTTGGCAGCAATAGTAGAGAATCCACCACCAACTGCTCCTT 930
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 859 CACCAAGCTTTTATGAACTCTTGGCAGCAATCGTAGAGAATCCACCACCAACTGCTCCTT 918
Query 931 CTGATCAATTCTCACCTGAATTCTGCTCCTTTGTATCAGCCTGCATACAAAAAGATCCTC 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CTGATCAATTCTCACCTGAATTCTGCTCCTTTGTATCAGCCTGCATACAAAAAGATCCTC 978
Query 991 CAGCAAGAGCATCATCTTTGGACCTCTTGAGTCATCCATTCATAAAAAAGTTTGAGGACA 1050
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 979 CAGCAAGAGCATCATCTTTGGAACTCTTGAGTCATCCATTCATAAAAAAGTTTGAAGACA 1038
Query 1051 AGGATATCGATCTCGGGATACTTGTTGGCACTCTGGAACCACCTGTTAACTACCTTAGAT 1110
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 AGGATATTGATCTCGGGATACTTGTTGGCACTCTGGAACCACCTGTTAACTACCTTAGAT 1098
Query 1111 AAGTAAGCCCTCTTCTTCTGCATTTGCATTTGGTATATGATATGATA--A---GATACAT 1165
|||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 1099 AAGTAAACCCTCTTCTTCCGCATTTGCATTTGGTATATGATATGATATGATAAGATACAT 1158
Query 1166 GATATTGTGTAATGTGTCTCTAAAGACTATTACTTGACTATAAAAGTTGAATGAGATTTT 1225
||||||||||||||| |||||| ||| ||||||||||| || ||||||||||||||||||
Sbjct 1159 GATATTGTGTAATGTATCTCTACAGATTATTACTTGACAATGAAAGTTGAATGAGATTTT 1218
Query 1226 ATT 1228
|||
Sbjct 1219 ATT 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5