BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56590.1
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950331 jgi|Araly1|950331|scaffold_802218.1 2529 0.0
Ahg492563 jgi|Araly1|492563|fgenesh2_kg.7__1996__AT4G23020.1 167 3e-40
Ahg945085 jgi|Araly1|945085|scaffold_701314.1 141 2e-32
> Ahg950331 jgi|Araly1|950331|scaffold_802218.1
Length=1561
Score = 2529 bits (1369), Expect = 0.0
Identities = 1496/1559 (96%), Gaps = 2/1559 (0%)
Strand=Plus/Plus
Query 183 AAGTGTGTAGTTACTCAGCAATGGCGAGAGACTTCAAGCTTATCTTCTCCATTTCAATTC 242
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1 AAGTGTGTAGTTACACAGCAATGGCGAGAGACTTCAAGCTCATCTTCTCCATTTCTCTTC 60
Query 243 TGCTTCTGCTTCTAGACTGTTGTTACGGTGGCAAGGTCGGAGTTTGTTACGGAAGAAGCG 302
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCTTCTGCTTCTTGACTGTTGCTACGGTGGCAAGGTCGGAGTTTGTTACGGAAGAAGCG 120
Query 303 CCGACGATCTTCCAACACCGTCAAAAGTTGTTCAATTGATTCAACAGCACAACATCAAAT 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGACGATCTTCCAACACCGGCAAAAGTTGTTCAATTGATTCAACAGCACAACATCAAAT 180
Query 363 ACGTTAGAATCTACGATTACAATTCTCAAGTCCTCAAAGCATTTGGAAACACAAGCATTG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACGTTAGAATCTACGATTACAATTCTCAAGTCCTCAAAGCATTTGGAAACACAAGCATTG 240
Query 423 AGCTAATGATTGGAGTTCCAAACTCTGATCTTAACGCTTTCTCTCAATCCCAATCAAATG 482
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 241 AGCTTATGATTGGAGTTCCAAACTCTGATCTTAATGCTTTCTCACAATCCCAATCAAATG 300
Query 483 TGGACACCTGGCTTAAGAACAGCGTCTTACCATACTATCCAACGACCAAGATCACTTACA 542
| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TAGATACGTGGCTTAAGAACAGCGTCTTACCTTACTATCCAACGACCAAGATCACTTACA 360
Query 543 TTACCGTTGGAGCTGAATCTACTGATGATCCACACATCAATGCTTCGTCTTTCGTTGTCC 602
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 361 TTACCGTTGGAGCTGAGTCTACTGATGATCCACACATCAATGCTTCATCTTTTGTTGTTC 420
Query 603 CCGCGATGCAGAATGTCTTAACCGCTCTGAGAAAAGTCGGTTTGAGTAGAAGAATCAAGG 662
|||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 421 CCGCGATGCAGAATGTGTTAACCGGTCTGAGGAAAGTCGGTTTGAGTAGAAGAATCAAGG 480
Query 663 TTTCGACTACTCTTTCCCTCGGAATTCTCTCTAGATCTTTCCCTCCTTCTGCTGGAGCAT 722
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTCGACGACTCTTTCGCTCGGGATTCTCTCTAGATCTTTCCCTCCTTCTGCTGGAGCAT 540
Query 723 TCAACAGCAGCTATGCTTATTTCTTGAGACCAATGTTAGAGTTTCTTGCAGAGAATAAGT 782
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 541 TCAACAGCAGCTATGCTTATTTCTTGAGACCAATGTTAGAGTTCCTTGCAGAGAATAATT 600
Query 783 CTCCTTTCATGATCGATCTTTATCCGTACTACGCTTACAGAGACTCTCCGAACAATGTGT 842
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 601 CTCCTTTCATGATCGATCTTTATCCGTATTACGCTTATAGAGACTCTCCAAACAATGTGT 660
Query 843 CTTTGGATTATGTGTTGTTTGAGTCTTCCTCTGAAGTGATTGACCCAAACACGGGTTTGC 902
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 CTTTGGATTATGTGTTGTTTGAGTCTTCCTCTGAAGTGATTGACCCGAACACGGGTTTGC 720
Query 903 TTTACAAGAACATGTTTGATGCTCAAGTTGATGCTCTTTATTACGCTCTCACGGCTTTAA 962
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 721 TTTACAAGAACATGTTTGATGCTCAAGTTGATGCTCTCTATTATGCTCTCACGGCTTTAA 780
Query 963 ACTTCAGGACAATCAAGATTATGGTTACTGAGACTGGATGGCCAACCAAAGGTTCACCGA 1022
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 781 ACTTCCGAACAATCAAGATTATGGTTACCGAGACTGGATGGCCAACCAAAGGTTCACCGA 840
Query 1023 AGGAGAAAGCTGCTGCGTCTTCTGACAACGCGGAGACATACAATTCAAACATAATCCGTC 1082
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 841 AGGAGAAAGCTGCTGCGTCTCCTGACAACGCGGAGACATACAATTCAAACATAATCCATC 900
Query 1083 ATGTAGTTACCAACCAAGGCACACCTGCAAAGCCAGGAGAGGCAATGAACGTTTATATAT 1142
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 901 ATGTGGTTACCAACCAAGGCACACCTGCAAAACCAGGAGAGGCGATGAACGTTTATATAT 960
Query 1143 TCTCATTGTTCAACGAGAATCGGAAAGCGGGTTTGGATTCAGAGAGAAACTGGGGATTGT 1202
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 961 TCTCATTGTTCAACGAGAATCGAAAAGCGGGTTTAGATTCAGAGAGAAACTGGGGATTGT 1020
Query 1203 TCTACCCTGACCAGACAAGTGTTTATCAGTTGGATTTCACGGGAAAGAGCAACGGGTTTC 1262
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 TCTACCCTGACCAGACGAGCGTTTATCAGTTGGATTTCACGGGAAAGAGTAACGGGTTTC 1080
Query 1263 ACTCTAATTCGAGTGGTACAAACTCAAGTGGGAGTAGTAATAGCTGGTGCATTGCTTCTT 1322
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1081 ACTCGAATTCGAGTGGTACAAACTCGAGTGGGAGTAGTAATAGCTGGTGCATTGCTTCCT 1140
Query 1323 CTAAAGCTTCAGAGAGAGATCTGAAAGGTGCTTTGGATTGGGCTTGTGGTCCTGGAAATG 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTAAAGCTTCAGAGAGAGATCTGAAAGGTGCTTTGGATTGGGCTTGTGGTCCTGGAAATG 1200
Query 1383 TTGATTGCACAGCTATTCAGCCAAGCCAGCCTTGTTTTCAACCAGATACTTTGGTTTCTC 1442
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1201 TTGATTGCACAGCTATTCAGCCAAGCCAGCCTTGTTTCCAACCAGATACTTTGGTTTCTC 1260
Query 1443 ATGCTTCTTTCGTGTTCAATAGCTATTTCCAACAGAACAGAGCAACAGACGTTGCTTGCA 1502
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1261 ATGCTTCTTTCGTGTTCAATAGCTATTTCCAGCAGAATAGAGCAACAGACGTTGCTTGTA 1320
Query 1503 GCTTTGGAGGAGCTGGTGTTAAAGTCAACAAGGACCCTAGTTATGACAAATGCATATACA 1562
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCTTTGGAGGAGCTGGTGTTAAGGTCAACAAGGACCCTAGTTATGACAAATGCATATACA 1380
Query 1563 TTACTGCAGGAGGGAACAAAACCAAGGCGACGAATGCAACTGCATTGACCTCCTCTGCTT 1622
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TAACTGCAGGAGGGAACAAAACCAAGGCGACGAATGCAACTGCATTGACCTCCTCTGCTT 1440
Query 1623 CAACTCCACGTGGAAACGAACTACTCCAATGGATTTTGAAACTCTGTCTCATGATCTCGT 1682
||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1441 CAACTAAAAGTGGAAACGAACCACTCCGATGGATTTTGAAACTCTGTCTCATGATCTCGT 1500
Query 1683 TGTTCTTCAGTTTGCAAACTATGAATTCACAGGCACTGTAACC-GAAATCTGAAAGAAA 1740
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1501 TGTTCTTCAGTTTGCACTCTATGAATTCACAGGCACTGTAACCAGAA-TCTGAAAGAAA 1558
> Ahg492563 jgi|Araly1|492563|fgenesh2_kg.7__1996__AT4G23020.1
Length=1272
Score = 167 bits (90), Expect = 3e-40
Identities = 107/115 (93%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 1713 AGGCACTGTAACCGAAATCTGAAAGAAATGTAGCAATAGCAAGAAAAAGCAAAATTTGTT 1772
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 AGGCACTGTAACCGGAATCTGAAAGAAATGTAGCAATAGCAAGAAAAAGCAAAATTTGTT 629
Query 1773 CCTGAATAGTTTGGTCTAGAAATTGTGACACCGTCTAACGATTTTGTCTTTCTTC 1827
||||||||| ||||||||| ||||||| | |||||| ||||||||||||||||
Sbjct 628 CCTGAATAGGTTGGTCTAGCAATTGTGTCT--GTCTAAAGATTTTGTCTTTCTTC 576
> Ahg945085 jgi|Araly1|945085|scaffold_701314.1
Length=1652
Score = 141 bits (76), Expect = 2e-32
Identities = 194/249 (78%), Gaps = 16/249 (6%)
Strand=Plus/Plus
Query 1307 TGGTGCATTGCTTCTTCTA-AAGCTTCAGAGAGAGATCTGAAAG-GTGCTTTGGATTGGG 1364
||||| ||||||||||| | ||||||||| || ||| ||| || || ||||| ||||
Sbjct 1194 TGGTGTATTGCTTCTTC-ACAAGCTTCAGTGACAGAACTG-CAGACCGCGTTGGACTGGG 1251
Query 1365 CTTGTGGTCCTGGAAATGTTGATTGCACAGCTATTCAGCCA-AGCCAGCCTTGTTTTCAA 1423
||||||||||||||||||||||||| | ||| |||| ||| | ||| ||||| ||| ||
Sbjct 1252 CTTGTGGTCCTGGAAATGTTGATTGTTCCGCTGTTCAACCAGA-CCAACCTTGCTTTGAA 1310
Query 1424 CCAGATACT-TTGGTTTCTCATGCTTCTT-TCGTGTTCAATAGCT-ATTTCCAACAGAAC 1480
||||| ||| || | || || || || | | | |||||| | || ||| |||||||| |
Sbjct 1311 CCAGACACTGTTC-TCTCACACGCATCGTAT-GCGTTCAACA-CTTATTACCAACAGAGC 1367
Query 1481 AGAGCAA-CAGACGTTGCTTGCAGCTTTGGA-GGAGCTGGTGTTAAAGTCAACAAGGACC 1538
|||||| |||| | | |||||||||| | ||||| | ||| ||||| |||||||||
Sbjct 1368 GGAGCAAGCAGAA-TAGATTGCAGCTTTA-ATGGAGCCAGCGTTGAAGTCGACAAGGACC 1425
Query 1539 CTAGTTATG 1547
| |||||||
Sbjct 1426 CAAGTTATG 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69324245900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5