BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56600.1

Length=704
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950332 jgi|Araly1|950332|scaffold_802219.1                        630    3e-180


> Ahg950332 jgi|Araly1|950332|scaffold_802219.1
Length=438

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 407/439 (93%), Gaps = 3/439 (1%)
 Strand=Plus/Plus

Query  93   gaagaa-gaagaaaaCAAACATGTCGTGGCAGACTTACGTCGACGATCACTTAATGTGCG  151
            |||||| |||||| || || |||||||||||||||||||||||||||||||| |||||||
Sbjct  1    GAAGAAGGAAGAAGACGAAGATGTCGTGGCAGACTTACGTCGACGATCACTTGATGTGCG  60

Query  152  ATGTTGC-AGGCAACCGCCTCACCGCCGCCGCAATTCTCGGCCAAGACGGTAGCGTCTGG  210
            | ||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   ACGTT-CAAGGCAACCGCCTCACCGCCGCCGCAATTCTCGGCCAAGACGGCAGCGTCTGG  119

Query  211  GCTCAGAGCAACAATTTTCCTCAGGTGAAGCCTGAGGAAATTCAGGGCATCAAAGACGAT  270
            |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct  120  GCTCAGAGCAGCAATTTCCCTCAGTTGAAGCCTGAGGAAATTCAGGGCATCAAAGACGAT  179

Query  271  TTTACTACACCTGGAACACTTGCCCCAACAGGATTGTTCCTTGGTGGTAACAAGTACATG  330
            |||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct  180  TTTACTTCGCCTGGAATACTTGCCCCAACAGGATTGTTCCTTGGTGGCAACAAGTACATG  239

Query  331  GTAATCCAAGGAGAGCCTAATGCCGTCATTCGAGGAAAGAAGGGAGCTGGTGGTGTTACC  390
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GTAATCCAAGGAGAGCCAAATGCCGTCATTCGAGGAAAGAAGGGAGCTGGTGGTGTTACC  299

Query  391  ATCAAGAAGACCACCTTAGCTTTGGTATTTGGTATCTATGATGAACCAATGACTCCTGGA  450
            |||||||| ||||||  |||||| || |||||||||||||| ||||||||| ||||||||
Sbjct  300  ATCAAGAAAACCACCCAAGCTTTTGTCTTTGGTATCTATGAAGAACCAATGGCTCCTGGA  359

Query  451  CAATGCAATATGGTTGTGGAGAATCTCGGTGAGTACCTGATTGAATCGGGGCTCTGAAAC  510
            |||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct  360  CAATGCAATACGGTCGTGGAGAGTCTCGGTGACTACCTGATTGAATCGGGGCTCTGAAAC  419

Query  511  TTAAGCTGCTACTATATTC  529
              |||| ||| ||||||||
Sbjct  420  ACAAGCCGCTGCTATATTC  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25885460643


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5