BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56610.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495751 jgi|Araly1|495751|fgenesh2_kg.8__1567__AT5G56610.1 1112 0.0
> Ahg495751 jgi|Araly1|495751|fgenesh2_kg.8__1567__AT5G56610.1
Length=875
Score = 1112 bits (602), Expect = 0.0
Identities = 809/902 (90%), Gaps = 41/902 (5%)
Strand=Plus/Plus
Query 17 TTCTTCCCGGCGATGACCGATGAAACGGAGGAAGATGACACGACGCAGCAGCGATCATCA 76
||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 1 TTCTTCCCGGCGATGGCCGGTGGAACGGAGGAAGATGACAAGACGCAGCAGCGATCATCA 60
Query 77 CGAAACGACGGCGTTTCAAAGAATAAG-GGTAAG-G-GT---TT-TAAGGGAGATAAAGC 129
||||||||||||||||||||||| ||| | ||| | || || ||||||||||||||
Sbjct 61 CGAAACGACGGCGTTTCAAAGAAGAAGAAG-AAGAGTGTAGGTTCGAAGGGAGATAAAGC 119
Query 130 AAAGAGGGCTCTAATCGGAGCTGGTGGTCGGATCCTTTTTTACCCAACTCTTTTGTACAA 189
|||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct 120 AAAGAGAGCTCTAATCGGAGCTGGTGGTCGGATCCTGTTTTATCCGACACTTTTATACAA 179
Query 190 CCTCGTCCGCTTTAAACTCCAGTCTCAATTCCGATGGTGGGATCAAATCGATGAGTATCT 249
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CCTCGTCCGCTTCAAACTCCAGTCTCAATTCAGATGGTGGGATCAAATCGATGAGTATCT 239
Query 250 TTTGATGGGAGCGGTTCCATTTCGTAAGGATGTTCCGAGACTAAAA-AAGTTAGGTGTTG 308
| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 240 TCTGATGGGAGCGGTTCCATTTCGTAAGGATGTTCCGCGACTAAAACAA-TTAGGTGTTG 298
Query 309 GTGGGGTAATCACTCTTAATGAACCTTATGAGACTTTGGTACCATCTTCTTTGTACAGTG 368
|||| || || ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 299 GTGGCGTGATTACTCTTAATGAACCTTATGAGACTTTGGTACCATCCTCTTTGTACAATG 358
Query 369 CTTACGAAATGGAGCATCTAGTGATACCAACACGGGATTACTTGTTTGCTCCTTCAATTG 428
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 CTTATGAAATGGAGCATCTAGTGATACCAACACGGGATTACTTGTTTGCTCCTTCGATTG 418
Query 429 TC-GATATAACCTTAGCTGTAAACTTCATTCACAAGAATGCTTTACTTGGTAAAACAACA 487
| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 419 -CAGATATAACCCGAGCTGTAAACTTCATTCACAAGAATGCTTTGCTTGGTAAAACTACC 477
Query 488 TATGTCCATTGCAAAGCTGGTCGAGGAAGGAGTACTACTGTTGTTCTCTGTTATCTGATT 547
|| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 478 TACGTCCATTGCAAAGCTGGTCGCGGAAGAAGTACTACCGTTGTTCTCTGTTATCTGATT 537
Query 548 GAACATAAGAGTATGACTGTGGCTGCAGCTTTCGAACACGTGCGCTCGATAAGACCCCGG 607
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 538 GAACATAAGAGTATGACTGTAGCTGCAGCTTTTGAACACGTGCGCTCGATAAGACCGCGG 597
Query 608 GTTTTGTTGCATC-CTTCGCAGAGGAAGGTTGTTGAGGAATTT-AGCAGATTACAATCTC 665
||||| ||||| | |||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 598 GTTTTATTGCA-CGCTTCACAGAGGAAGGTTGTTGAGGAATTTCA-CAGATTACAATCTC 655
Query 666 CTTTGAGCGAATCAACATTCATCGCAACCTCTGGTGATATTGTAAGTTAAATGGCAGAGA 725
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 656 CTTTGAGCGAATCAGCATTCATCGCAACCTCTAATGATATTGTAAGTTAAATGGCAAAGA 715
Query 726 CTAGTCAGTCATAGCTCAGCATTTCCGGCATTGATCAACAGCTAAGCAGGAGCT-TTTTG 784
||| ||||| | ||| | | | | |||||||||||||| | |||||
Sbjct 716 CTA---AGTCA--G-TCA---T-------A---A-CT-CAGCTAAGCAGGAGGTGTTTTG 754
Query 785 -CAAGATTTCTCTGCTTCCTTTTGGTTCTG-TTAAAATCTTCGGTTTTGATCATCTGATT 842
|| || |||||||| ||||||||||| || ||||||||| ||||||||||| |||||||
Sbjct 755 ACATGACTTCTCTGCCTCCTTTTGGTT-TGGTTAAAATCTCCGGTTTTGATCTTCTGATT 813
Query 843 CGGCTTGGTTCCTGAGTATAACAAAATGACTTGTTGATTAACAATTGTGTATAATAAAAA 902
|||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct 814 CGGCTTGGTTCCTGAGTATAACAAAATGACTTGTTGATTAACAATTGTTTAGAATACAAA 873
Query 903 TT 904
||
Sbjct 874 TT 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5