BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56620.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495753 jgi|Araly1|495753|fgenesh2_kg.8__1569__AT5G56620.1 1797 0.0
> Ahg495753 jgi|Araly1|495753|fgenesh2_kg.8__1569__AT5G56620.1
Length=1171
Score = 1797 bits (973), Expect = 0.0
Identities = 1112/1176 (95%), Gaps = 22/1176 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAATAGTAAATGTAACCTCATAGATTCAAAGCTCGAAGAACATCATCATCTTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAATAGTAAATGTAACCTCATAGATTCAAAGCTCGAAGAACATCATCATCTTTGC 60
Query 61 GGATCAAAACATTGTCCTGGATGTGGTCGCATGATTCAAGCTGCTACTAAACCAAATTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATCAAAACATTGTCCTGGATGTGGTCGCATGATTCAAGCTGCTACTAAACCAAATTGG 120
Query 121 GTTGGATTGCCGGCAGGAGTGAAATTCGATCCGACAGATCAAGAACTTATAGAACATTTA 180
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTGGATTGCCAGCTGGAGTGAAATTCGATCCGACAGATCAAGAACTTATAGAACATTTA 180
Query 181 GAAGCAAAAGTGAAGGGAAAAGAAGAAAATAAGAAATGGTCGTCGTCTCATCCACTTATA 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GAAGCAAAAGTGAAGGGAAAAGAAGAAAATAAGAAATGGTCATCGTCTCATCCACTTATA 240
Query 241 GATGAATTTATTCCCACCATTGATGGAGAAGATGGAATATGTTACACTCATCCTCAGAAG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GATGAATTTATTCCCACCATTGATGGAGAAGATGGGATATGTTACACTCATCCTCAGAAG 300
Query 301 CTTCCAGGGGTGACAAGAGATGGCTTGAGCAAACACTTCTTCCACAAACCATCAAGAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCCAGGGGTGACAAGAGATGGCTTGAGCAAACACTTCTTCCACAAACCATCAAGAGCT 360
Query 361 TACACAACCGGAACAAGAAAACGACGTAAAATAATTCAAACCGATCACGACTCTGAGTTA 420
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 361 TACACAACCGGAACAAGGAAACGACGTAAAATAATCCAAACCGATCACGACTCCGAGGTA 420
Query 421 ACCGGATCATCAGAAACCAGGTGGCACAAAACGGGCAAAACAAGACCGGTTATGATCAAC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCGGATCATCAGAAACCAGGTGGCACAAAACGGGCAAAACAAGACCGGTTATGATCAAT 480
Query 481 GGTCAACAAAGAGGATGCAAGAAGATATTAGTACTCTACACAAACTTCGGCAAGAATCGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTCAACAAAGAGGATGCAAGAAGATATTAGTACTCTACACAAACTTCGGCAAGAATCGA 540
Query 541 CGACCGGAGAAAACAAATTGGGTGATGCATCAATATCATTTAGGGATTAATGAGGAAGAG 600
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 541 CGACCGGAGAAAACAAATTGGGTGATGCATCAATATCATTTAGGCATCAATGAGGAAGAG 600
Query 601 AGAGAAGGAGAACTTGTGGTCTCCAAGATATTTTATCAGACACAACCAAGACAGTGTGTT 660
||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 601 AGAGAAGGAGAGCTTGTGGTCTCTAAGATCTTTTATCAGACACAACCTAGACAGTGTGTT 660
Query 661 AGTAATACTAATTGGTCTGATCACCATGGTTCCAAGGACGTGATCGGAATTGGTGTCGGA 720
||||||| | ||||||||||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 661 AGTAATATTCATTGGTCTGATAATCATGGTTCCAAAGACATGATCGGAATTGGTGTCGGA 720
Query 721 GATGAGATTTCCAGCGTAGCTGCCACGTTGCAGAGTCTTGGCTCCGGTGACG-T--C--- 774
|||||||||||| | |||||||||||||||||| |||||||||||||| || | |
Sbjct 721 GATGAGATTTCC-G--TAGCTGCCACGTTGCAGACTCTTGGCTCCGGTGTCGGTGACATT 777
Query 775 GTTTCTAGGGTTAATATGCATCCCCATACAAGATCCTTTGATGAGGGGACAGCCGAAGCT 834
|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 778 GTTTCTAGGGTTAATATGAATCCCTATACAAGAGGCTTTGATGAGGGGACAGCCGAAGCT 837
Query 835 TCAAAGGGAAGAGAGAACCAGCATGTGTCTGGCACGTGCGAGGAAGTAcatgatgggatc 894
|||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||| ||||
Sbjct 838 TCAAAGGGAAGAGAAAACCAGCGTGTGTATGGCACGTGCGAGGAAGTACATAATGAGATC 897
Query 895 --a---t-a--a-catcatcaatgtcatctcatcatatgattcatgatcatcataatcaa 945
| | | | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 TTAACATCATCAACATCATCAATGTCCTCTCATCATATGATTCATGATCATCATAATCAA 957
Query 946 catcatcaaatcGGAGATAGAAGAGAAT-TTCACATGTCATCATCATATCCCATGACCCC 1004
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 958 CATCATCAAATCGGAGATAGAAGAGA-TCTTCACATGTCATCATCATATCCCATGACCCC 1016
Query 1005 TACTATCACATCAC-AACATGAGTCAATCTTCCATGTTACAAGTACTATGCCCTTTCAGG 1063
|||||||||||||| || |||| || |||||||||| |||||||||||||||||||||||
Sbjct 1017 TACTATCACATCACGAA-ATGACTCGATCTTCCATGGTACAAGTACTATGCCCTTTCAGG 1075
Query 1064 GGTCGGTCGTCTGGTTCGGGATTAGAAGACCTAATTATGGGTTGTACCACAGCTACGTGT 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1076 GGTCGGTCGTCTGGTTCGGGATTAGAAGACCTAATTATGGGTTGTACCACAGCTACTTGC 1135
Query 1124 ACAGAAGACGTAAGTTTCTAACGAATTTGTGTATTT 1159
| |||||||||||||||||||||||| ||||||||
Sbjct 1136 ATAGAAGACGTAAGTTTCTAACGAATACGTGTATTT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5