BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56640.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495755 jgi|Araly1|495755|fgenesh2_kg.8__1571__AT5G56640.1 1786 0.0
Ahg945448 jgi|Araly1|945448|scaffold_701677.1 769 0.0
> Ahg495755 jgi|Araly1|495755|fgenesh2_kg.8__1571__AT5G56640.1
Length=1150
Score = 1786 bits (967), Expect = 0.0
Identities = 1095/1156 (95%), Gaps = 11/1156 (1%)
Strand=Plus/Plus
Query 2 GAAGATGAATATCTCCGTCGAAAACCCTGTTTTTGTACATGAGGACTCGACAACGC---A 58
|||||||| ||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1 GAAGATGACTATCTCCGTCGAAAACCCTGTTTTTGTACATGAGGACTCTACGACGCAGAA 60
Query 59 GAAGACCGGAGAGTTACGATTGGACAGC-GACATACCAATGTCGAAGATATCATCCGATG 117
||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |||
Sbjct 61 GAAGACCGGAGAGTTACGAATGGACAGCGGA-ATACCAATGTCGAAGATATCATCCAATG 119
Query 118 ATGAAGTGTTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGAAGTGTTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGG 179
Query 178 ATACAAACAGCGAGAGGCAAAAGAGCGTCGAACATTTCTATGCAACACAACACACTAACC 237
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 180 ATACAAATAGCGAGAGGCAAAAGAGCGTCGAACATTTCTATAAAACACAACACATTAACC 239
Query 238 AAACTTTAGACTTTGTACAGAAAATGAGAAGTGAGTATGGAAAATTGGACAAGATGGTGA 297
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAGTTTGGACTTTGTAAAGAAAATGAGAAGTGAGTATGGAAAATTGGACAAGATGGTGA 299
Query 298 TGAACATTTGGGAATGTTGTGAACTTTCAAAAGAAGTGGTGGACGAGAGTGATCCCGACC 357
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 300 TGAACATTTGGGAATGTTGTGAACTTTTAAACGAAGTGGTGGACGAGAGTGATCCCGACC 359
Query 358 TCGACGAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCGACGAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATC 419
Query 418 CTAACGAAGATTGGCTTCATCTCACTGCGCTTATCCATGATCTTGGGAAGGTTCTTACCC 477
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 420 CAAACGAAGATTGGCTTCACCTCACTGCTCTTATCCATGATCTTGGGAAGGTTCTTACTC 479
Query 478 TACCACAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTTCCTGTTGGGT 537
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TACCACAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGGT 539
Query 538 GTGCATTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACCCTGATTTTAACA 597
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GTGCATTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACGCTGATTTTAACA 599
Query 598 ACCCTAAGTACAATACCAAAGCTGGAATTTATTCTGAAGGCTGTGGACTTGAAAATGTTC 657
| || ||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 600 ATCCAAAGTATAATACCAAAACTGGAATTTATTCTGAAGGATGTGGACTTGAGAATGTTC 659
Query 658 TTATGTCATGGGGACATGATGACTACATGTATCTGGTGGCCAAGGAGAATGGAAGCACCT 717
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TTATGTCATGGGGACATGATGACTACATGTATCTGGTGGCTAAGGAGAATGGAAGCACCC 719
Query 718 TACCATCCCCGGGACTATTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTG 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TACCATCCTCGGGACTATTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTG 779
Query 778 GAGCTTACACTCACCTTATGAACGAGGAAGACAAGGAGAATCTCAAATGGCTTCATGTTT 837
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 780 GAGCTTACACTCACCTTATGAACGAAGAAGACAAGGAAAATCTCAAATGGCTCCATGTTT 839
Query 838 TTAACAAGTATGACTTATACAGCAAGAGCAAAGTACACGTCAATGTCGAGAAGGTTAAGC 897
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 TCAACAAGTACGACTTATACAGCAAGAGCAAAGTACACGTGGATGTCGAGAAGGTTAAGC 899
Query 898 CGTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCTGAGGTGGTGAAAACGGC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 CGTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCTGAGGTGGTGAAAACTGC 959
Query 958 ATCGAGGCCGTCCaaaaaaaGTCTACTATTAGAAAGATAAAA-TGGTGTGTGTGTTTGAT 1016
||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||
Sbjct 960 ATCAAGGCCGTCCAAAAAA-GTCTACTATTAGAAAGATAAAAATGGTGAGTGTGATTGAT 1018
Query 1017 TACTTGTCGTTTAAGCATATTATTGCCCAGTTAATAAAGTTGTATTGTTACATTAGCTAA 1076
|| | |||||||||| || | ||||||||||| |||||||||||||||||||||||||||
Sbjct 1019 TAGTAGTCGTTTAAG-AT-T-ATTGCCCAGTTGATAAAGTTGTATTGTTACATTAGCTAA 1075
Query 1077 TGTTAATGCTAATGTTGATACAAACGGTAATTGTATCTCGTCTGTCCTATTATAAACTAA 1136
|||||||||||||||| |||||||| | |||||||| ||||||||||| |||||| |||
Sbjct 1076 TGTTAATGCTAATGTTTATACAAACTATTATTGTATC-CGTCTGTCCTACTATAAATTAA 1134
Query 1137 AATGATATTTTCTTCT 1152
||| ||||||||||||
Sbjct 1135 AATAATATTTTCTTCT 1150
> Ahg945448 jgi|Araly1|945448|scaffold_701677.1
Length=995
Score = 769 bits (416), Expect = 0.0
Identities = 709/848 (84%), Gaps = 29/848 (3%)
Strand=Plus/Plus
Query 117 GATGAAG-TGTTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACAC 175
||||||| | |||||||| ||||||||||| |||||||| ||||||||||| |||| ||
Sbjct 145 GATGAAGCT-TTTTTGGCCCCTGAGATGAATGCATTTGGACGTCAATTCAGGGACT--AC 201
Query 176 GGATACAAACAGCGAGAGGCAAAAGAGCGTCGAACA-TTTCTATGCA-A-CACAACACAC 232
||| | || |||||||||||| |||||||| | ||| || || | ||||||||
Sbjct 202 -GATGTTGAGAGTGAGAGGCAAAAGGGCGTCGAAGAGTTT-TA--CAGATTACAACACAT 257
Query 233 TAACCAAACTTTAGACTTTGT-ACAGAAAATGAGAAG-TGAGTATGGAAAATTGGACAAG 290
|||||||||| | |||||||| ||| || ||||| | ||| ||||||||||| || ||
Sbjct 258 TAACCAAACTGTCGACTTTGTGACA-AAGATGAG-GGCTGAATATGGAAAATTAGATAAA 315
Query 291 ATGGTGATGAACATTTGGGAATGTTGTGAACTTTC-AAAAGAAGTGGTGGACGAGAGTGA 349
| |||||||| |||||||||||||||||| | ||| || || || ||||| ||||||||
Sbjct 316 AAGGTGATGAGCATTTGGGAATGTTGTGAGC-TTCTTAATGAGGTTGTGGATGAGAGTGA 374
Query 350 TCCCGACCTCGACGAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAA 409
||| || |||||||| || || ||||| |||||||||||||| |||||||||||||| ||
Sbjct 375 TCCAGATCTCGACGAGCCTCAGATTCAGCATTTGCTTCAATCCGCGGAAGCAATCCGCAA 434
Query 410 AGATTATCCTAACGAAGATTGGCTTCATCTCACTGCGCTTATCCATGATCTTGGGAAGGT 469
|||||| ||||| || |||||||||||||| || || ||||| |||||||||||||||||
Sbjct 435 AGATTACCCTAATGAGGATTGGCTTCATCTAACCGCTCTTATTCATGATCTTGGGAAGGT 494
Query 470 TCTTACCCTACCACAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTTCC 529
| |||| || ||||| || ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 495 TATTACTCTTCCACAATTCGGAGGACTTCCACAATGGGCTGTTGTTGGTGACACATTCCC 554
Query 530 TGTTGGGTGTGCATTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACCCTGA 589
|||||| ||||| |||||||||||||||||||| |||||||| ||||| || ||||| ||
Sbjct 555 TGTTGGCTGTGCCTTTGATGAATCTAACGTACATCACAAGTACTTTATAGATAACCCAGA 614
Query 590 TTTTAACAACCCTAAG--TACAATACCAAAGCTGGAATTTATTCTGAAGGCTGTGGACTT 647
|||| |||| | ||| ||||| || ||| ||| ||||| || ||||| |||||| ||
Sbjct 615 TTTTCACAA--CAAAGCCTACAACACTAAAAATGGGATTTACTCCGAAGGATGTGGA-TT 671
Query 648 GAA-AATGTTC-TTATGTCATGGGGACATGATGACTACATGTATCTGGTGGCCAAGGAGA 705
|| |||| || | ||||| ||||| ||||| ||||||||||| ||||| || || || |
Sbjct 672 AAACAATG-TCATGATGTCTTGGGGCCATGACGACTACATGTACCTGGTTGCTAAAGAAA 730
Query 706 ATGGAAGCACCTTACCATCCCCGGGACTA-TTCATCATCCGATACCATTCCTTTTATCCA 764
| ||||| ||||| || || || |||| | || ||||| ||||||||||||||||| |||
Sbjct 731 ACGGAAGTACCTTGCCGTCTCCTGGAC-AGTTTATCATACGATACCATTCCTTTTACCCA 789
Query 765 TTGCACAAGGCTGGAGCTTACACTCACCTTATGAACGAGGAAGACAAGGAGAATCTCAAA 824
||||||| |||||||| ||||| || |||||||||||||||||||||||||| || ||
Sbjct 790 TTGCACACGGCTGGAGAATACACCCATCTTATGAACGAGGAAGACAAGGAGAACCTGAAG 849
Query 825 TGGCTTCATGTTTTTAACAAGTATGACTTATACAGCAAGAGCAAAGTACACGTCAATGTC 884
||||| || ||||| |||||||| ||||| ||||| ||||||||||| || || ||||
Sbjct 850 TGGCTACACGTTTTCAACAAGTACGACTTGTACAGTAAGAGCAAAGTTCATGTTGATGTG 909
Query 885 GAGAAGGTTAAGCCGTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCT-GAG 943
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 910 GAGAAGGTCAAGCCCTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAA-CTTGAG 968
Query 944 GTGGTGAA 951
||||||||
Sbjct 969 GTGGTGAA 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5