BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56670.1

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950338 jgi|Araly1|950338|scaffold_802225.1                        342    1e-93


> Ahg950338 jgi|Araly1|950338|scaffold_802225.1
Length=230

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 216/231 (94%), Gaps = 2/231 (1%)
 Strand=Plus/Plus

Query  59   AAGCAGAGAAGCTAATCAATCATGGGAAAGGTTCACGGATCTTTGGCTCGTGCCGGTAAG  118
            ||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    AAGAAGAGAAGTTAATAAATCATGGGAAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAG  60

Query  119  GTTAGAGGACAAACTCCAAAGGTTGCGAAGCAAGATAAGAAAAAGAAGCCCAGAGGTCGT  178
            |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  61   GTTAGAGGACAAACACCAAAGGTTGCGAAGCAAGATAAGAAGAAGAAGCCTAGAGGTCGT  120

Query  179  GCTCACAAGCGTCTGCAGCACAACCGTCGTTTTGTCACCGCAGTTGTTGGTTTCGGAAAG  238
            |||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct  121  GCTCACAAGCGTTTGCAGCACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTCGGAAAG  180

Query  239  AAGAGAGGACCCAACTCTTCTGAGAAATAGAAGAAGTTAGAGAGAA-AGAT  288
            |||||||||||||||||||||||||| ||||||||| |||||| || ||||
Sbjct  181  AAGAGAGGACCCAACTCTTCTGAGAAGTAGAAGAAGGTAGAGA-AAGAGAT  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17017392694


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5