BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56680.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495758 jgi|Araly1|495758|fgenesh2_kg.8__1574__AT5G56680.1 2811 0.0
Ahg926483 jgi|Araly1|926483|scaffold_202044.1 1027 0.0
Ahg497343 jgi|Araly1|497343|fgenesh2_kg.239__1__AT1G70980.1 931 0.0
Ahg926121 jgi|Araly1|926121|scaffold_201682.1 569 2e-161
> Ahg495758 jgi|Araly1|495758|fgenesh2_kg.8__1574__AT5G56680.1
Length=1925
Score = 2811 bits (1522), Expect = 0.0
Identities = 1797/1929 (93%), Gaps = 22/1929 (1%)
Strand=Plus/Plus
Query 75 GTGCTTTTGTTTTCGTAGATAACGAACAATGGCTGATGAGATTGTGCCGCCGGCGACTCA 134
||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 1 GTGCTTTTGGTTTCGTAGATCACGAACAATGGCTGATGAGATTGTGCCTCCGGCGAATCA 60
Query 135 ATTAGCCGCCGTATCCTTAGAAAACGATGGATCTACGGTGCAAAGAGCTCAATTCTCTAA 194
||||||||| |||||||| | ||||| |||||||||||||||| ||||||||| || ||
Sbjct 61 ATTAGCCGCAGTATCCTTGGGTAACGACGGATCTACGGTGCAAAAAGCTCAATTTTCGAA 120
Query 195 CCGGGTTTTGATTCGAACGATTTTGGATCGACCTGACGGCGGAGCTGGACTCGCCGGTCA 254
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCGGGTTTTGATTCGAACCATTTTGGATCGACCTGACGGCGGAGCTAAACTCGCCGGTCA 180
Query 255 -AACGGTTCGAATCGGTGGTTGGG-TAAAATCCGGAAGAGATCAAGGGAAAAGAACGTTT 312
|| |||||||||||||||||| ||||| |||||||||| ||||||||| || | |||
Sbjct 181 GAA-AATTCGAATCGGTGGTTGGGTTAAAA-CCGGAAGAGAGCAAGGGAAAGGAGC-TTT 237
Query 313 -TCTTTCCTTGCGGTTAACGATGGATCTTGTCCAGCGAATCTTCAGGTTATGGTGGATCC 371
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 238 CGCTTTCCTTGAGGTTAACGATGGATCTTGTCCAGCGAATCTTCAGGTTATGGTGGATTC 297
Query 372 GTCTCTCTATGATGTCTCTAACTTGGTTGCTACGGGAACTTGTGTGACTGTTGATGGAGT 431
|||| | |||||| ||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 298 GTCTTTATATGATCTCTCTAAGTTGGTTGCGACGGGAACTTGTGTTACTGTTGATGGAGT 357
Query 432 TTTGAAGGTTCCACCGAAAGGTAAAGGTACGCAGCAGCA-GATTGAGCTTAACGTTGTGA 490
|||||||||||||||| |||||||||||||| ||||| | ||||||||||| ||||||||
Sbjct 358 TTTGAAGGTTCCACCGGAAGGTAAAGGTACGAAGCAG-AGGATTGAGCTTAGCGTTGTGA 416
Query 491 AGGTGATTGATGTTGGAACGGTGGATGCGTCTAAGTATCCACTTCCTAAGACTAAGTTGA 550
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 417 ACGTGATTGATGTTGGAACTGTGGATGCGACTAAGTATCCACTTCCTAAGACTAAGTTGA 476
Query 551 CTCTTGAGACTTTGAGAGATGTGCTTCATCTTCGTTCTAGAACTAACTCGATCTCAGCTG 610
|||||||| |||||||||||||||||||||||| || || |||||||| ||||| || |
Sbjct 477 CTCTTGAGTTTTTGAGAGATGTGCTTCATCTTCGATCCAGGACTAACTCAATCTCTGCAG 536
Query 611 TTGCAAGAATTCGTAATGCTCTTGCTTTTGCGACTCACAGTTTCTTTCAAGAGCATAGTT 670
|||| ||||| |||||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 537 TTGCCAGAATCCGTAATGCGCTTGCTTTTGCGACCCATAGTTTCTTTCAAGAACATAGTT 596
Query 671 TCCTTTACATTCACACTCCTATCATCACGACAAGTGATTGTGAAGGTGCTGGTGAAATGT 730
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 597 TCCTTTACATTCACACTCCTATCATTACAACAAGTGATTGTGAAGGTGCTGGTGAAATGT 656
Query 731 TCCAAGCAACAACTTTGATCAATTACACTGAGAGGTTGGAGCAGGATCTCATTGATAACC 790
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 657 TCCAAGCAACAACCTTGATCAATTACACTGAGAAGTTGGAGCAGGATCTCATTGATAACC 716
Query 791 CTCCGCCTACTGAGGCTGATGTTGAAGCTGCGAGGCTCATTGTCATTGAGAGAGGTAATG 850
||| |||||||||||||||||| |||||||||||||||||||| | ||||||||| |||
Sbjct 717 CTCTGCCTACTGAGGCTGATGTCGAAGCTGCGAGGCTCATTGTTAAGGAGAGAGGTGATG 776
Query 851 TTGTAGCGGAACTGAAAGCTGCCAAAGCAAGCAAGGAAGCGATCACTGCTGCTGTTGCTG 910
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 777 TTGTAGCGCAACTGAAAGCTGCCAAAGCAAGCAAGGAAGAGATCACTGCTGCTGTTGCTC 836
Query 911 AACTTAAAATAGCAAAGGAGACTTTTGCTCATATTGATGAGAGGTCGAGGCTT-AGACCT 969
||||||||||||||||||||| ||||||||||||||| |||||||| | |||| || |||
Sbjct 837 AACTTAAAATAGCAAAGGAGAGTTTTGCTCATATTGAAGAGAGGTCAAAGCTTAAG-CCT 895
Query 970 GGACTACCTAAGAAAGATGGAAACATTGATTATTCCAAGGATTTCTTTGGTCGTCAAGCT 1029
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 896 GGACTACCTAAAAAAGATGGAAACATTGATTATTCCAAGGATTTCTTTGGCCGTCAAGCT 955
Query 1030 TTCTTGACAGTTTCCGGTCAATTACAAGTGGAGACCTATGCTTGTGCTCTTAGCAATGTG 1089
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 956 TTCTTGACAGTTTCGGGGCAATTACAAGTGGAGACGTATGCTTGTGCTCTTAGCAGTGTG 1015
Query 1090 TATACATTTGGCCCGACTTTCCGGGCAGAGAACTCTCACACTTCAAGGCATCTTGCTGAA 1149
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1016 TATACATTCGGCCCGACTTTCCGGGCAGAGAACTCGCACACTTCAAGGCATCTAGCTGAA 1075
Query 1150 TTCTGGATGGTTGAGCCTGAGATTGCTTTTGCAGATCTAGAGGACGACATGAACTGTGCA 1209
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTCTGGATGGTTGAGCCTGAAATTGCTTTTGCAGATCTAGAGGACGACATGAACTGTGCA 1135
Query 1210 GAGGCGTATGTGAAATACATGTGCAACTGGTTGCTTGAGAAATGTTACGCTGACATGGAA 1269
|||||||||||||||||||||||||| |||||||| || |||||| || ||||||||||
Sbjct 1136 GAGGCGTATGTGAAATACATGTGCAAGTGGTTGCTGGATAAATGTCGCGATGACATGGAA 1195
Query 1270 CTTATGGCTAAGAATTTCGACTCAGGATGCATTGACAGGCTAAAATTGGTTGCCTCTACT 1329
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 1196 CTTATGGCTAAGAATTTCGACTCAGGATGCATTGACAGGCTAGAATTGGTTGAATCAACT 1255
Query 1330 CCGTTTGGGCGTATAACATACACTAAAGCAATAGAGCTACTTGAGGAAGCTGTGGCTAAA 1389
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1256 CCGTTTGGGCGTATAACATACACTGAAGCAATAGAGCTACTTGAGGAAGCTGTGGCTAAA 1315
Query 1390 GGAAAGGAATTTGATAACAATGTGGAGTGGGGAATCGACTTAGCCTCGGAGCATGAAAGA 1449
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1316 GGAAAGGAATTTGATAACAAAGTTGAGTGGGGAATCGACTTAGCTTCGGAGCATGAAAGA 1375
Query 1450 TACTTGACAGAGGTTCTGTTTCAAAAGCCACTTATTGTCTATAACTACCCGAAAGGAATC 1509
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TACTTGACAGAGGTTTTGTTTCAAAAGCCACTTATTGTCTATAACTACCCGAAAGGAATC 1435
Query 1510 AAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCATGGATGTCCTC 1569
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1436 AAAGCTTTTTACATGAGACTTAACGACGATGAGAAGACTGTTGCAGCCATGGATGTCCTC 1495
Query 1570 GTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGATATGATGTCATC 1629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGATATGATGTCATA 1555
Query 1630 AAAAAGAGGATTGAGGAGATGGGTCTTCCAATAGAGCCATATGAGTGGTACCTAGACTTG 1689
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1556 AAAAAGAGGATTGAGGAGATGGGTCTACCAATAGAGCCATATGAGTGGTACCTAGACTTG 1615
Query 1690 CGCCGTTATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGAACGTATGATTCTC 1749
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1616 CGCCGATATGGAACAGTGAAGCATTGTGGATTTGGACTTGGCTTCGAACGTATGATTCTG 1675
Query 1750 TTCGCTACTGGACTTGATAACATCAGAGACGTTATTCCTTTCCCTCGCTATCCTGGAAAA 1809
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1676 TTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCGCTATCCTGGAAAA 1735
Query 1810 GCTGATCTTTGATTCCTCTTCTTTACACCATTTACATACACAATTTCGCTT-TT----AT 1864
|||||||||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 1736 GCTGATCTTTGATTCCTCTTCTTTACACCATTTACAAACACAATTTCGATTGTTTTTTAT 1795
Query 1865 TAGCTGGTCTGGTTTCCATAACCGACTTGGTTT-AGTTTACTTTTTAAGTTGGTTAAAGG 1923
||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 1796 TAGCTGGTCTGGTTTTGATAACCGACTTGGTTTTAGTTTACTTTTAAAGTTGGTTAAATG 1855
Query 1924 AAAATTGTAT--T----GACTTTTGATTTTTTATCTCTATGGATCTGGTTTTGTTCGGTT 1977
|||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1856 AAAATTGTATGGTTTTTGACTTTTGATTTTATATCTCTATGGATCTGCTTTTGTTCGGTT 1915
Query 1978 ATCCCGATT 1986
|||||||||
Sbjct 1916 ATCCCGATT 1924
> Ahg926483 jgi|Araly1|926483|scaffold_202044.1
Length=1340
Score = 1027 bits (556), Expect = 0.0
Identities = 739/826 (89%), Gaps = 18/826 (2%)
Strand=Plus/Plus
Query 1028 CTTTCTTGACAGTTTCCGGTCAATTACAAGTGGAGACCTATGCTTGTGCTCTTAGCAATG 1087
|||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 521 CTTTCTTGAC-GGTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGCGCTCTTAGCAGCG 579
Query 1088 TGTATACATTTGGCCCGACTTTCCGGGCAGAGAACTCTCACACTTCAAGGCATCTT-GCT 1146
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 580 TGTATACATTTGGCCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGCAT-TTAGCT 638
Query 1147 GAATTCTGGATGGTTGAGCCTGAGATTGCTTTTGCAGATCTAGAGGACGACATGAACTGT 1206
||||||||||||||||||||||| || |||||||||||| || | |||||||||||||||
Sbjct 639 GAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGACATGAACTGT 698
Query 1207 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGCTTGAGAAATGTTACGCTGACATG 1266
|||||||||||||||||||||||||||||||||||| | |||| |||| || |||||||
Sbjct 699 GCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCCGATGACATG 758
Query 1267 GAACTTATGGCTAAGAAT-TTCGACT-CAGGATGCATTG-ACAGGCTAAAATTGGTTGCC 1323
|| |||||| ||||||| || || | ||||||| | | ||||||||| ||||||||
Sbjct 759 GATTTTATGGATAAGAATGTT-GA-TGGGGGATGCA-CGAAAAGGCTAAAAATGGTTGCC 815
Query 1324 TCTA-CTCCGTTTGGGCGTATAACATACACTAAAGCAATAGAGCTACTTGAGGAAGCTGT 1382
| || ||||| |||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 816 GAAACCT-CGTTTAAGCGTGTAACATACACTGAAGCAATAGAGGTACTTGAGAAAGCTGT 874
Query 1383 GGCTAAAGGAAA-G--GAATTTGATAACAATGTGGAGTGGGGAATCGACTTAGCCTCGGA 1439
||| ||||||| | | ||||||||||| |||||| || ||| ||||| ||||| ||
Sbjct 875 AGCTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTTGGCCTCAGA 934
Query 1440 GCATGAAAGATACTTGACAGAGGTTCTGT-T--TCAAAAGCCACTTATTGTCTATAACTA 1496
||||||||||||||||||||||||| || | |||||||||| | ||||| ||||||||
Sbjct 935 GCATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGTTTATAACTA 994
Query 1497 CCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGC 1556
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CCCGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGC 1054
Query 1557 CATGGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACG 1616
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1055 CATGGATGTCCTCGTTCCAAAGGTGGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACG 1114
Query 1617 ATATGATGTCATCAAAAAGAGGATTGAGGAGATGGGTCTTCCAATAGAGCCATATGAGTG 1676
|||||||||||||| | ||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 1115 ATATGATGTCATCAGACAGAGGATCGAGGAGATGCGTCTACCAATAGAGCCATATGAGTG 1174
Query 1677 GTACCTAGACTTGCGCCGTTATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGA 1736
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GTACCTAGACTTGCGCCGATATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGA 1234
Query 1737 ACGTATGATTCTCTTCGCTACTGGACTTGATAACATCAGAGACGTTATTCCTTTCCCTCG 1796
||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 1235 ACGTATGATTCAGTTCGCTACAGGAATTGATAACATCAGAGATGTTATTCCTTTCCCTCG 1294
Query 1797 CTATCCTGGAAAAGCTGATCTTTGATT-CCTCTTCTTTACACCATT 1841
||||||||||||||||||||| ||||| |||| ||| || || |||
Sbjct 1295 CTATCCTGGAAAAGCTGATCTCTGATTTCCTCCTCTCTAGACAATT 1340
Score = 562 bits (304), Expect = 4e-159
Identities = 434/496 (88%), Gaps = 12/496 (2%)
Strand=Plus/Plus
Query 475 GAGCTTAACGTTGTGAAG-GTGATTGATGTTGGAACGGTGGATGCGTCTAAGTATCCACT 533
||||||||||||| | || ||||||||||| ||||| || ||| || |||||||||| ||
Sbjct 30 GAGCTTAACGTTGAG-AGTGTGATTGATGTGGGAACTGTTGATCCGACTAAGTATCCGCT 88
Query 534 TCCTAAGACTAAGTTGACTCTTGAGACTT-TGAGAGATGTGCTTCATCTTCGTTCTAGAA 592
|||||||||||||||||||| |||| || | |||||| |||||||||||||||| || |
Sbjct 89 TCCTAAGACTAAGTTGACTCCTGAG-TTTCTCAGAGATTTGCTTCATCTTCGTTCCAGGA 147
Query 593 CTAACTCGATCTCAGCTGTTGCAAGAATTCGTAATGCTCTTGCTTTTGCGACTCACAGTT 652
|||||| ||||||||| || |||||||| |||||||| |||||||||||||| |||||||
Sbjct 148 CTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACCCACAGTT 207
Query 653 TCTTTCAAGAGCATAGTTTCCTTTACATTCACACTCCTATCATCACGACAAGTGATTGTG 712
| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 208 TTTTTCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGTGATTGTG 267
Query 713 AAGGTGCTGGTGAAATGTTCCAAGCAACAACTTTGATCAATTACACTGAGAGG-TTGGAG 771
|||| ||||||||||||||||||| |||||| ||||||||| ||||||||||| ||| ||
Sbjct 268 AAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGGGTTG-AG 326
Query 772 CAGGATCTCATTGATAACCCTCCGCCTACTGAGGCTGATGTTGAAGCTGCGAGGCTCATT 831
||||||||||||||||||||||| || |||||||||||||||||||| | ||| || |||
Sbjct 327 CAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAGACTTATT 386
Query 832 GTCATTGAGAGAGGT-AA--TGTTGTAGCGGAACTGAAAGCTGCCAAAGCAAGCAAGGAA 888
|||| ||||||||| || ||| || ||| | |||||||||||||| ||||||||||||
Sbjct 387 GTCAAGGAGAGAGGTGAAGCTGT-GTCGCG-A-CTGAAAGCTGCCAAGGCAAGCAAGGAA 443
Query 889 GCGATCACTGCTGCTGTTGCTGAACTTAAAATAGCAAAGGAGACTTTTGCTCATATTGAT 948
| |||||||||| | |||||| |||||| |||||||||| | ||| |||||| ||||
Sbjct 444 GAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCATGTTGAA 503
Query 949 GAGAGGTCGAGGCTTA 964
|||||||| |||||||
Sbjct 504 GAGAGGTCAAGGCTTA 519
> Ahg497343 jgi|Araly1|497343|fgenesh2_kg.239__1__AT1G70980.1
Length=1341
Score = 931 bits (504), Expect = 0.0
Identities = 774/900 (86%), Gaps = 35/900 (4%)
Strand=Plus/Plus
Query 173 TGCA-AAGAGCTCAATTCTCTAACCGGGTTTTGATTCGAACGATTTTGGATCGACCTGAC 231
|||| || ||| |||||||| ||||||||||||||||| ||| ||| | || | |
Sbjct 2 TGCAGAA-AGCGCAATTCTCCGACCGGGTTTTGATTCGATCGA-TTT---T-GA---G-C 51
Query 232 GGCGGAGCTGGACTCGCCGGTCAAACGGTTCGAATCGGTGGTTGGG-TAAAATCCGGAAG 290
||||||||| ||| |||||||||| |||| ||||||| ||||||| ||||| |||||||
Sbjct 52 GGCGGAGCTAAACTTGCCGGTCAAAAGGTTAGAATCGGCGGTTGGGTTAAAA-CCGGAAG 110
Query 291 AGATCAAGGGAAA-AGAACGTTTTCTTTCCTTGCGGTTAACGATGGATCTTGTCCAGCGA 349
| | ||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 111 ACAACAAGGGAAAGGGAA-ATTTGCTTTCCTTGAGGTTAACGATGGATCTTGTCCAGCGA 169
Query 350 ATCTTCAGGTTATGGTGGATCCGTCTCTCTATGATGTCTCTAACTTGGTTGCTACGGGAA 409
|||||||||||||||| ||| | ||||| |||||| |||||| || ||||| |||||||
Sbjct 170 ATCTTCAGGTTATGGTTGATTCTTCTCTTTATGATCTCTCTAGGTTAGTTGCGACGGGAA 229
Query 410 CTTGTGTGACTGTTGATGGAGTTTTGAAGGTTCCACC-GAAAGGTAAAGGTACGCAGCAG 468
||||||| ||||||||||||||||||||||||||||| ||| ||||||||| | | |||
Sbjct 230 CTTGTGTTACTGTTGATGGAGTTTTGAAGGTTCCACCTGAA-GGTAAAGGTTTGAAACAG 288
Query 469 CAG-ATTGAGCTTAACGTTGTGAAG-GTGATTGATGTTGGAACGGTGGATGCGTCTAAGT 526
|| || ||||||||||||| || | ||||||||||| ||||| || ||| || ||||||
Sbjct 289 -AGTATCGAGCTTAACGTTGAGA-GTGTGATTGATGTGGGAACTGTTGATCCGACTAAGT 346
Query 527 ATCCACTTCCTAAGACTAAGTTGACTCTTGAGACTT-TGAGAGATGTGCTTCATCTTCGT 585
|||| |||||||||||||||||||||| |||| || | |||||| ||||||||||||||
Sbjct 347 ATCCGCTTCCTAAGACTAAGTTGACTCCTGAGT-TTCTCAGAGATTTGCTTCATCTTCGT 405
Query 586 TCTAGAACTAACTCGATCTCAGCTGTTGCAAGAATTCGTAATGCTCTTGCTTTTGCGACT 645
|| || ||||||| ||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 406 TCCAGGACTAACTTGATCTCAGCAGTGGCAAGAATCCGTAATGCGCTTGCTTTTGCGACC 465
Query 646 CACAGTTTCTTTCAAGAGCATAGTTTCCTTTACATTCACACTCCTATCATCACGACAAGT 705
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 466 CACAGTTTTTTTCAAGAACATGGTTTCCTTTACATTCACACTCCTATCATCACAACAAGT 525
Query 706 GATTGTGAAGGTGCTGGTGAAATGTTCCAAGCAACAACTTTGATCAATTACACTGAGAGG 765
||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 526 GATTGTGAAGGAGCTGGTGAAATGTTCCAAGTAACAACCTTGATCAATCACACTGAGAGG 585
Query 766 -TTGGAGCAGGATCTCATTGATAACCCTCCGCCTACTGAGGCTGATGTTGAAGCTGCGAG 824
||| ||||||||||||||||||||||||| || |||||||||||||||||||| | |||
Sbjct 586 GTTG-AGCAGGATCTCATTGATAACCCTCCACCCACTGAGGCTGATGTTGAAGCGGAGAG 644
Query 825 GCTCATTGTCATTGAGAGAGGT-AA--TGTTGTAGCGGAACTGAAAGCTGCCAAAGCAAG 881
|| ||||||| ||||||||| || ||| || ||| | |||||||||||||| |||||
Sbjct 645 ACTTATTGTCAAGGAGAGAGGTGAAGCTGT-GTCGCG-A-CTGAAAGCTGCCAAGGCAAG 701
Query 882 CAAGGAAGCGATCACTGCTGCTGTTGCTGAACTTAAAATAGCAAAGGAGACTTTTGCTCA 941
|||||||| |||||||||| | |||||| |||||| |||||||||| | ||| |||||
Sbjct 702 CAAGGAAGAGATCACTGCTTCCGTTGCTCAACTTACTATAGCAAAGGCGTGTTTAGCTCA 761
Query 942 TATTGATGAGAGGTCGAGGCTTA-GACCTGGACTACCTAAGAAAGATGGAAACATTGATT 1000
| |||| |||||||| ||||||| | |||||| ||||||| ||||||||||| |||||||
Sbjct 762 TGTTGAAGAGAGGTCAAGGCTTAAG-CCTGGATTACCTAAAAAAGATGGAAAAATTGATT 820
Query 1001 ATTCCAAGGATTTCTTTGGTCGTCAAGCTTTCTTGACAGTTTCCGGTCAATTACAA-GTG 1059
|||| | ||||||||||| ||||||||||||||||| ||| | ||||| |||||| |||
Sbjct 821 ATTCGGATGATTTCTTTGGCCGTCAAGCTTTCTTGACGGTT-CTGGTCAGTTACAACGTG 879
Score = 507 bits (274), Expect = 2e-142
Identities = 411/475 (87%), Gaps = 17/475 (4%)
Strand=Plus/Plus
Query 1079 TTAGCAATGTGTATACATTTGGCCCGACTTTCCGGGCAGAGAACTCTCACACTTCAAGGC 1138
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 870 TTA-CAACGTGTATACATTTGGCCCGACTTTCCGAGCAGAGAACTCTCACACTTCAAGGC 928
Query 1139 ATCTT-GCTGAATTCTGGATGGTTGAGCCTGAGATTGCTTTTGCAGATCTAGAGGACGAC 1197
|| || |||||||||||||||||||||||||| || |||||||||||| || | ||||||
Sbjct 929 AT-TTAGCTGAATTCTGGATGGTTGAGCCTGAAATAGCTTTTGCAGATATACATGACGAC 987
Query 1198 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGCTTGAGAAATGTTAC 1257
||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |
Sbjct 988 ATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGATCAAGAATTGTTCC 1047
Query 1258 GCTGACATGGAACTTATGGCTAAGAAT-TTCGACTCAGG-ATGCATTGACA-GGCTAAAA 1314
| ||||||||| |||||| ||||||| || || | || ||||| || | ||||||||
Sbjct 1048 GATGACATGGATTTTATGGATAAGAATGTT-GA-TGGGGGATGCAC-GAAAAGGCTAAAA 1104
Query 1315 TTGGTTGCCTCTAC-TCCGTTTGGGCGTATAACATACACTAAAGCAATAGAGCTACTTGA 1373
|||||||| || || |||| |||| ||||||||||| ||||||||||| |||||||
Sbjct 1105 ATGGTTGCCGAAACCTC-GTTTAAGCGTGTAACATACACTGAAGCAATAGAGGTACTTGA 1163
Query 1374 GGAAGCTGTGGCTAAAGGAAAGGAA-TTT--GATAACAATGTGGAGTGGGGAATCGACTT 1430
| ||||||| ||| ||||||||| ||| |||||||| |||||| || ||| |||||
Sbjct 1164 GAAAGCTGTAGCTGAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGAGGAAAATGGACTT 1223
Query 1431 AGCCTCGGAGCATGAAAGATACTTGACAGAGGTTCTGT-T--TCAAAAGCCACTTATTGT 1487
||||| ||||||||||||||||||||||||||| || | |||||||||| | |||||
Sbjct 1224 GGCCTCAGAGCATGAAAGATACTTGACAGAGGTTGAGTATGATCAAAAGCCAATAATTGT 1283
Query 1488 CTATAACTACCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1542
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1284 TTATAACTACCCGAAAGAAATCAAAGCTTTTTACATGAGACTTAACGATGATGAG 1338
> Ahg926121 jgi|Araly1|926121|scaffold_201682.1
Length=1534
Score = 569 bits (308), Expect = 2e-161
Identities = 489/573 (85%), Gaps = 25/573 (4%)
Strand=Plus/Plus
Query 1260 TGACATGGAACTTATGGCTAAGAATTTCGACTCAGGATGCATTGACAGGCTA-AAATTGG 1318
||||||||||||||| | |||||| ||||| || |||||| |||||||| ||| |||
Sbjct 956 TGACATGGAACTTAT-G--AAGAATGTCGACGAAGCCTGCATTCACAGGCTACAAA-TGG 1011
Query 1319 TTGCCTCT-ACTCCGTTTGGGCGTA-TAACATACACTAAAGCAATAGA-GCTACTTGAGG 1375
|||||| | ||| |||||| || | |||||||||| ||||||||| | ||||| ||||
Sbjct 1012 TTGCCT-TGACTTCGTTTGAACG-AGTAACATACACCAAAGCAATA-ACTCTACTCGAGG 1068
Query 1376 AAGCTGTGGCTAAAGGAAAGGAATTTGATAA-CAATGTGGAGTGGGGAATCGACTTAGCC 1434
|||||||||||||||||||| ||||||| || ||| |||||| || |||| ||||||||
Sbjct 1069 AAGCTGTGGCTAAAGGAAAGAAATTTGAGAACCAA-GTGGAGCGGAGAATGGACTTAGCA 1127
Query 1435 TCGGAGCATGAAAGATACTTGACAGAGGTTCTGTTTCAAAAGCCACTTATTGTCTATAAC 1494
|| ||||||||||||||||| ||||||||| ||| | ||||||| ||||||||||||||
Sbjct 1128 TCTGAGCATGAAAGATACTTAACAGAGGTTTTGTATAAAAAGCCTGTTATTGTCTATAAC 1187
Query 1495 TACCCGAAAGGA-ATCAAAGCTTTTTACATGAGACTTAACGATGAT-GAGAAGACAGTTG 1552
||||||||| || ||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 1188 TACCCGAAA-GAGATCAAAGCTTTCTACATGAGACTTAACGATGATGGA-AAGACAGTTG 1245
Query 1553 CTGCCA-TGGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAA 1611
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CTG-CATTTGATGTCCTCGTTCCAAAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAA 1304
Query 1612 GAACG-AT--ATGATGTCATCAAAAAGAGGATTGAGGAGATGGGTCTTCCAATAGAGCCA 1668
||||| || | | | |||| ||| || || ||||||| |||||| |||||| || |
Sbjct 1305 GAACGGATGGACGTTCTCATGGAAA-GA--ATGGAGGAGAAGGGTCTACCAATAAAGGAA 1361
Query 1669 TATGAGTGGTACCTAGACTTGCGCCGTTATGGAACAGTGAAGCATTGTGGGTTTGGACTT 1728
|| ||||||||| | |||||| | ||| |||||||||||||||||| ||| ||||||||
Sbjct 1362 TACGAGTGGTACATTGACTTGAGACGTCATGGAACAGTGAAGCATTCTGGATTTGGACTG 1421
Query 1729 GGCTTCGAACGTATGATTCTCTTCGCTACTGGACTTGATAACATCAGAGACGTTATTCCT 1788
||||| || |||||| ||||||| ||||| ||| | ||||| || ||||||||||||||
Sbjct 1422 GGCTTGGAGCGTATGCTTCTCTTTGCTACAGGAATGGATAATATTAGAGACGTTATTCCC 1481
Query 1789 TTCCCTCGCTATCCTGGAAAAGCTGATCTTTGA 1821
||||||||||||||||||| |||||| ||||||
Sbjct 1482 TTCCCTCGCTATCCTGGAAGAGCTGACCTTTGA 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5