BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56700.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495760 jgi|Araly1|495760|fgenesh2_kg.8__1576__AT5G56700.1 994 0.0
Ahg474625 jgi|Araly1|474625|fgenesh2_kg.1__4579__AT4G00315.1 150 2e-35
> Ahg495760 jgi|Araly1|495760|fgenesh2_kg.8__1576__AT5G56700.1
Length=1036
Score = 994 bits (538), Expect = 0.0
Identities = 889/1050 (85%), Gaps = 57/1050 (5%)
Strand=Plus/Plus
Query 42 AGGGTCGGAAAACCCCAAATTTGTCTTGAGT-CTTCGAGTGATATGGCTAAAATCAGTGA 100
|||||||||||||||||| ||||||||| || ||| | |||||||||||||||||||||
Sbjct 1 AGGGTCGGAAAACCCCAAGTTTGTCTTGGGTCCTT-AATTGATATGGCTAAAATCAGTGA 59
Query 101 CTTGTCTGATGAATTACTGGTGAAGATATTATCGTTTCTTCCAACAAAAGAAGCAGTATC 160
||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 60 CTTGTCTGATGAATTGCTGGTGAAGATATTATCGTTTCTTCCAACAAAAGTTGCTGTATC 119
Query 161 AACTAGTGTTTGTCGAAACAATGGGAGTTTCTTTGGATGTGGTTGTCC-AAACTCGAGTT 219
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 120 AACTAGTGTTTGTCTAAACAATGGGAGTTTCTTTGGATGTGGTTG-CCTAAACTCGAGTT 178
Query 220 CTACTTTA--G---T--GA-------TGGAT-T---TG--AAATCGTGGGTTAGAATTGC 259
|||||||| | | || ||||| | || |||||||||| | |||||||
Sbjct 179 CTACTTTAGTGACATGGGAGTTTCTTTGGATGTGGATGTAAAATCGTGGGCTGGAATTGC 238
Query 260 AGTTTCTCGCTGTGTGCGTGAGCTAAGCATC-AGTTTACA--T-GAT-ACGACAGCTGCT 314
|||||||||||| |||||||||||||| ||| | ||| || | || | || | ||| |
Sbjct 239 AGTTTCTCGCTGCGTGCGTGAGCTAAGTATCTA-TTTTCATTTCTATAAAGA-ACCTGGT 296
Query 315 GTATCATTGCCCAGTAGTTTGTATACCTGCAAATCGCTCGTGACTTTGAAACTTTACGG- 373
| | ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 297 TTGTTATTGCCCAGTAGTTTGTATACCTGCAAATCGCTTGTGACTTTGAAACTTGAAGGC 356
Query 374 TAAGAAGGTTCTTTTGGATGTTCCTCGAACGGTATT-CCTCCCTTCCTTGAAAACTTTGC 432
| | ||| ||||| |||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 357 T-ATAAGATTCTTGTGGATGTTCCTCCAACGGT-TTGTCTCCCTTCCTTGAAAACTTTGC 414
Query 433 AACTTGA-ACGTTTGAGATACTCAG-ATGAAGATTCTCTTCGCCTGCTTCTATC-CTACT 489
|||| | | | ||| ||| | | | |||||||||||| | ||||||||||| | | |
Sbjct 415 GACTT-AGATGGGTGAAATA-TTTGAAGGAAGATTCTCTTGGACTGCTTCTATCGC-ATT 471
Query 490 GCCCTGTTCTGGAAGATCTGAGTATTGTACGAGAAGAC-T-ATGACAATTTGAGAGCGTT 547
||||||||||||||||||||||||||| || || | | | |||||||| ||||||||||
Sbjct 472 GCCCTGTTCTGGAAGATCTGAGTATTGAAC--GATGTCATAATGACAATGTGAGAGCGTT 529
Query 548 AGTTGTTATTGTCCCATCCTTGCAGCGTTTATCCTT-A-GAGATAC-CTGGTAATTGTTC 604
||||||||||||| | ||||||||||||||||| || | | | || ||| | |||||
Sbjct 530 AGTTGTTATTGTCTCGTCCTTGCAGCGTTTATCTTTAATTATAGACAGTGG--A-TGTTC 586
Query 605 TTCTGATGGGTATGTGATAGTTACTCCTTCTTTGAAGTATTTCAAAGTTGTGGATTATAG 664
|||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 587 TTCTGATGCGTATGTGATAGTTACCCCTTATTTGAAGTATTTCAAAGTTGTGGATCCTAG 646
Query 665 AGAAAGTATGTCCTATTTGATTGAGCAAATGCCAGAGCTGGAAGAGGCAGATATTGTTGT 724
||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 647 AGATAGTCTCTCCTATTTGATTGAGCATATGCCAGAGCTGGAAGAGGCAGATATCAATGT 706
Query 725 TCTGCAGTATCCCGAGAAGCTTCTCGAATCAGTTACATTTTTCAAACGCCTTTCTA-TAC 783
| ||| || |||||||||||||| |||| | || | | ||||||| ||||| | |||
Sbjct 707 TAAGCAAAATATCGAGAAGCTTCTCGTATCAATCACCTCTGTCAAACGTCTTTC-ATTAC 765
Query 784 GCGTAATATTCAACACTT-ATACAGAGACTGTGTATCGTGATGGAATAGTCTTCAATCGG 842
||| |||| | || | | |||||||||||||||| |||| || ||||||||||||
Sbjct 766 AAGTAGGCTTCAGGA-TTAACAAAGAGACTGTGTATCGTAATGGTATTGTCTTCAATCGG 824
Query 843 CTTGAAAATTTGAAGCTATGTATATGCAATGGTGATTGGTCCAAGTTACTTATCCAGTTT 902
|||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||
Sbjct 825 CTTGAAAATTTGAAGCTATGTATATGCAGTGATGATTGGTCAAAGTTACTTGTCCAGTTG 884
Query 903 CTCAAAGACTCACCTAACCTGCGAGTCCTCAATCTCCTCGTTGATGATTATCCGTCAAGT 962
|||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 885 CTCAAAGATTCTCCTAACCTGCGAGTCCTCAATCTCGTCGTTGATGATTATCCGTCAATT 944
Query 963 T-TGGGGGATTATGAACCGGTTCGCTGGAAAAATAATAAGAGCTCCGTCCCGAAATGTTT 1021
| ||||| || ||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 945 TATGGGGAAT-ATGAACCGGTTCGCTGGGAAAATAATCAGAGCTCCGTCCCTAAATGTTT 1003
Query 1022 GTTGGAGAGTCTTGAAACTTTTGAGTTTGC 1051
|||| | |||||||||||||| ||||||||
Sbjct 1004 GTTGAACAGTCTTGAAACTTTCGAGTTTGC 1033
> Ahg474625 jgi|Araly1|474625|fgenesh2_kg.1__4579__AT4G00315.1
Length=989
Score = 150 bits (81), Expect = 2e-35
Identities = 260/343 (76%), Gaps = 25/343 (7%)
Strand=Plus/Plus
Query 321 TTGCCCAGTAGTTTGTATACCTGCAAATCGCTCGTGACT-TTGAAACTTTACGGTAAGAA 379
||||| ||||| ||||||| |||||||||| | |||| | |||| || | | | | | |
Sbjct 55 TTGCCTAGTAGCTTGTATATCTGCAAATCGATTGTGA-TCTTGACAC-TGAAAG-ACG-A 110
Query 380 GGTTCTTTTGGATGTTCCTCGAACGGTAT-TCCTCCCTTCCTTGAAAACTTTGCAACTTG 438
| |||| ||||||||||| | ||||||| | ||||| ||| ||||||| ||| |||
Sbjct 111 GATTCTCGTGGATGTTCCTGGTACGGTATGT-CTCCCCTCCCTGAAAACGTTGTTCCTT- 168
Query 439 A-ACGTTTGAGATACTCAGATGAAGATTCTCTTCGCCTG-CTTCTATCCTACTGCCCTGT 496
| |||| ||| ||||| |||||| ||||||||| || | ||||| ||| ||||||||||
Sbjct 169 AGACGTGTGACTTACTCGGATGAAAATTCTCTTCACC-GACTTCTTTCCAACTGCCCTGT 227
Query 497 TCTGGAAGATC-TGAGTATTGTACGAGAAG-ACTATGACAATTTGAG-AGCGTTAGTTGT 553
||| || |||| || | | | | |||| | | | |||||||||| | | || || |||
Sbjct 228 TCTTGAGGATCTTG-TTGTGGAAAGAGATGAAAT-TGACAATTTGGGAAAAGTGAG-TGT 284
Query 554 TATTGTCCCA-TCCTTGCAGCGTTTATCCTTAGAGATACCTGGTAATTGTTCTTC-TGAT 611
||||| | | ||||||||| | || || || |||| ||| | ||| | || ||||
Sbjct 285 GATTGT-CAAGTCCTTGCAGAGACTAACCCTAAAGATGTCTGTTGCTTG-TGATCTTGAT 342
Query 612 GGG-TATGTGATAG-TTACTCCTTCTTTGAAGTATTTCAAAGT 652
||| | | |||| | ||||||||||||||||||||||||||||
Sbjct 343 GGGCT-TATGAT-GATTACTCCTTCTTTGAAGTATTTCAAAGT 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5