BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G56710.1

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495762 jgi|Araly1|495762|fgenesh2_kg.8__1578__AT5G56710.1         900    0.0  


> Ahg495762 jgi|Araly1|495762|fgenesh2_kg.8__1578__AT5G56710.1
Length=547

 Score =  900 bits (487),  Expect = 0.0
 Identities = 530/550 (96%), Gaps = 5/550 (1%)
 Strand=Plus/Plus

Query  1    CCCCTTTCTGTCTCTCGGCGTTCTTCAATCGAAAGGTaaagagtttgaagaagtaagtca  60
            ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
Sbjct  1    CCCCTTTCTGTCTCTCGACGTTCTTCAATCCAAAGGTACAGAGTTTGAAGAAGTAAGTAA  60

Query  61   cagagaaagag-aagatgtctgagaaaaagggaaggaaagaggaagTGATTACCAGAGAG  119
            ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  61   CAGAGAAAGAGAAAGATGTCTGAGAAAAAGGGAAGGAAAGAGGAAGTGGTGACCAGAGAG  120

Query  120  TACACCATTAACCTCCACAGACGCCTTCACAAATGCACCTTTAAGAAGAAGGCACCGAAA  179
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  121  TACACCATTAACCTCCACAGACGCCTTCACAAATGTACCTTTAAGAAGAAGGCACC-AAA  179

Query  180  -GCCATCAAGGAAATCAGGAAGTTCGCAGAGAAAGCTATGGGGACTAAGGACGTTAGGGT  238
             ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  180  TGCCATTAAGGAGATCAGGAAGTTTGCAGAGAAAGCTATGGGGACTAAGGACGTTAGGGT  239

Query  239  AGACGTGAAATTGAACAAGCAAATCTGGAGCAAGGGAATCAGAGGTCCACCAAGGAGGAT  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  AGACGTGAAATTGAACAAGCAAATCTGGAGCAAGGGAATCAGAGGTCCACCAAGGAGGAT  299

Query  299  CAGGGTTCGTGTTGCACGTAAGAGAAACGACGATGAAGATGCGAAGGAAGAGTTCTTCTC  358
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  300  CAGGGTTCGTGTTGCACGTAAGAGAAACGACGACGAAGATGCAAAGGAAGAGTTCTTCTC  359

Query  359  CCTTGTCACTGTTGCTGAAATCCCTGCAGAAGGACTCAGTGGTCTTGGCACAAAGGTCAT  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  CCTTGTCACTGTTGCTGAAATCCCTGCAGAAGGACTCAGTGGTCTTGGCACAAAGGTCAT  419

Query  419  CGAAGAGGAGGATTAAGAGAATCAGTAGAACAAgttttgtttggttttttacttttgttg  478
             ||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||
Sbjct  420  TGAAGAGGAGGATTGAGAGAGTCAGTAGAACAAGTTTTG-TT-GTTTTTTACTTTTGTTG  477

Query  479  ctgtgtttCAATTAAAAGTCTTGACCTTTCACTTTCTTCATTGTAGTGCATCTTGAATTT  538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  CTGTGTTTCAATTAAAAGTCTTGACCTTTCACTTTCTTCATTGTAGTGCATCTTGAATTT  537

Query  539  ACTTATGCAG  548
            ||||||||||
Sbjct  538  ACTTATGCAG  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22149414777


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5