BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56720.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331971 jgi|Araly1|331971|fgenesh1_pm.C_scaffold_8001314 1567 0.0
> Ahg331971 jgi|Araly1|331971|fgenesh1_pm.C_scaffold_8001314
Length=1020
Score = 1567 bits (848), Expect = 0.0
Identities = 963/1020 (94%), Gaps = 2/1020 (0%)
Strand=Plus/Plus
Query 1 ATGTGTAATTTGTTAAACATTGAGAAAGATCCTATAAGGGTTTTGATTACCGGTGCAGCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTAATTTGTTAAACATTGAGAAAGATCCTATAAGGGTTTTGATTACCGGTGCAGCA 60
Query 61 GGAAACATAGGATATGCAATTGCTCCAATGATTGCAAGAGGTATTATGCTAGGTCCAGAT 120
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGAAACATAGGATATGCAATTGTTCCAATGATTGCAAGAGGTATGATGCTAGGTCCAGAT 120
Query 121 CAACCCATGATTCTGCATTTACTTGATATAGAGCCAGCTTCAAGTTCACTAGAAGCTGTG 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 121 CAACCCATGATTCTGCATTTACTTGATATAGAACCAGCTTCAAGTTCGCTAGAGGCTGTG 180
Query 181 AAAATGGAGCTTCAAGATTCAGCTTTCCCTCTTCTCAAAGGCGTTATCGCGACAACAAAT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 181 AAAATGGAGCTTCAAGATTCAGCTTTCCCTCTTCTCAAAGGTGTTATCGCGACTACAGAT 240
Query 241 GTTGTTGAAGCATGTAAAGATGTGAATATCG-TGATAATGATCGGCGGATTCCCAAGGAT 299
||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||
Sbjct 241 GTTGTTGAAGCATGTAAAGATGTGAATATAGCT-ATAATGATGGGCGGATTCCCAAGGAT 299
Query 300 AGCAGGCATGGAAAGAAAAGATGTGATGTCGAAAAATGTTGTGATATATAAAGCTCAAGC 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 AGCAGGCATGGAAAGAAAAGATGTGATGTTGAAAAATGTTGTGATATATAAAGCTCAAGC 359
Query 360 TTCGGCTTTAGAGCGTTATGCATCAGATGATTGCAAGGTTCTTGTTGTCGCAAACCCTGC 419
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 TTCTGCTTTAGAGCGTTATGCATCAGAGGATTGCAAGGTTCTTGTTGTAGCAAACCCTGC 419
Query 420 AAACACTAATGCTCTGATCTTAAAAGAGTTTGCGCCATCAATCCCGGAAGAAAATATCAC 479
|||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 420 AAACACAAATGCTCTGATTTTAAAAGAGTTTGCTCCATCGATCCCAGAAGAAAACATCAC 479
Query 480 TTGCCTGACACGACTCGACCATAATCGAGCTCTAGCTCAGCTTGCAGATAAGCTAAGTGT 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGCCTGACACGGCTCGACCATAATCGAGCTCTAGCTCAGCTTGCAGATAAGCTAAGTGT 539
Query 540 TCCCGTGAGCAGTGTAAAGAACGTGATCGTTTGGGGTAACCATTCTTCAACTCAATATCC 599
||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TCCTGTAAGCAGCGTGAAGAACGTGATCGTTTGGGGAAACCATTCTTCAACTCAATATCC 599
Query 600 CGACACCAATCACGCAACAGTCTCTACAAAAACTGGAGACAGACCGTTAAAAGAACTAGT 659
||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||| ||
Sbjct 600 AGACACCAATCACGCAACCGTCTCTACAAAAAGTGGAGATAGACCGGTAAAAGAACTTGT 659
Query 660 CACAGATCACAACTGGCTGAAGAACGAGTTTATCGTGGAAGTTCAGCAACGCGGTGCAGC 719
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 660 CACAGATCACAACTGGCTGAAGAGTGAGTTTATTACGGAAGTTCAGCAACGTGGTGCAGC 719
Query 720 TGTTTTAAGAGCACGGAAACAGTCGAGTGCTTTTTCCGCTGCTGGTGCAGCTTGTGACCA 779
||||||||||| |||||||||| |||||||| ||||||||| | ||||||||||||||
Sbjct 720 CATTTTAAGAGCAAGGAAACAGTCAAGTGCTTTATCCGCTGCTAGCGCAGCTTGTGACCA 779
Query 780 TATCCGTGATTGGTTTCTTGGAACCCCTAAAGGAACTTGGGTTTCTATGGGTGTTTGTTC 839
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 TATCCGTGATTGGTTCCTTGGATCCCCTAAAGGAACTTGGGTTTCTATGGGTGTTTGTTC 839
Query 840 TGACGGCTCATATGGTATACCACCTGGTTTGGTTTACTCGTTTCCGGTTATCTGTGAGAA 899
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 840 TGACGGCTCATATGGTATACCACCCGATTTGGTTTACTCGTTTCCGGTTATCTGTGAGAA 899
Query 900 AGGGAGTTGGAAGATCGTACAAGGACTCAGTATAGACGAGTTTTCGAGGGAGAAAATGGA 959
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 900 AGGGAGTTGGAAGATCGTTCAAGGACTCAATATAGACGCGTTTTCGAGGGAGAAAATGGA 959
Query 960 TGACTCTGCACGAGAGCTAGCTGAAGAGAAGGATTTAGCTTATTCCTGTCTCAATGTATA 1019
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 960 TGACTCTGCACGAGAGCTAGCCGAAGAGAAGGATTTAGCTTATTCCTGTCTTAATGCATA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5