BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56740.1
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495765 jgi|Araly1|495765|fgenesh2_kg.8__1581__AT5G56740.1 2438 0.0
> Ahg495765 jgi|Araly1|495765|fgenesh2_kg.8__1581__AT5G56740.1
Length=1610
Score = 2438 bits (1320), Expect = 0.0
Identities = 1425/1476 (97%), Gaps = 5/1476 (0%)
Strand=Plus/Plus
Query 1 GTATCGCTCTCTCCGCATTTCCATTAACCCTCCAATTTTCCCGCCTTTGTCTCACTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTATCGCTCTCTCCGCATTTCCATTAACCCTCCAATTTTCCCGCCTTTGTCTCACTCTCT 60
Query 61 TCCCGCCTTGCACTCGCCGGGGACTCCATGGTTCAGAAGCAGCAAGCCTCCGCCGGTCCG 120
||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 61 TCCCGCCTT-CACTCGCCGGAGAATCCATGGTTCAGAAGCAGCAAGCCGCCGCCGGTCCG 119
Query 121 GGTACCGAGCCTAAGAAGCGTCGCCGTGTCGGATTTTCTCCCGCCGATACTGGTGTCGAG 180
| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 GTTACCGAGCCTAAAAAGCGTCGCCGTGTCGGATTTTCTCCCGCTGATACTGGTGTCGAG 179
Query 181 GCTAACGAGTGCATCAAAATTTATCTCGTTTCAAGCAAAGAGGAAGTTGATTCCT-CTGA 239
|||||||||||||||||||| || |||||||| ||||||||||||||||||| || ||||
Sbjct 180 GCTAACGAGTGCATCAAAATATACCTCGTTTCGAGCAAAGAGGAAGTTGATT-CTCCTGA 238
Query 240 TATTTCCAGCGTGAAGCCAGTTGACTTGAATGATTTCTTTGATGGAGATGGCAAGATTTA 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TATTTCCTGCGTGAAGCCAGTTGACTTGAATGATTTCTTTGATGGAGATGGCAAGATTTA 298
Query 300 TGGTTACCAAGGTTTGAAGATAAATGTATGGATCAATAGCATCTCATTACATTCATATGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGTTACCAAGGTTTGAAGATAAATGTATGGATCAATAGCATCTCATTACATTCATATGC 358
Query 360 TGATATCACATACCAGAGCACCATTAACGGAGACAAAGGCATCACGGACCTCAAATCTGC 419
|||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 359 TGATATTACATACCAGAGCACAACCAACGGAGACAAAGGCATCACGGACCTCAAGTCTGC 418
Query 420 TTTACAGAACATATTTGCTGAGACCATTGTTGATACCAAGGATGAGTTTCTGCAAACCTT 479
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 419 TTTACAGAACATATTTGCTGAGACCATTGTTGATAACAAGGATGAATTTCTGCAAACCTT 478
Query 480 TTCGACACAGAGAGATTTTATCAGAAATATGGTCTCGAATGGAGAGGTAATGCATGCTGG 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 479 TTCGACACAGAGTGATTTTATCAGAAATATGGTCTCGAATGGAGAGGTAATGCGTTCTGG 538
Query 540 AGCAACAGATGGAAGCAGCAAGAATGCTGAAGTGGTTCCTTCTGATCCCCAGGTTATACG 599
||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 539 AGCGACAGATGGAAGCAGCAATAATGCTGAAGTGGTTCCTTCAGATCTCCAGGTTATACG 598
Query 600 GATGGAAATTGGTTCTCCAAATGCTGGACTCCTCTATAGCCGATTGGTACCCCTTGTTCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GATGGAAATTGGTTCTCCAAATGCTGGACTCCTCTATAGCCGATTGGTACCCCTTGTTCT 658
Query 660 TCTTTTTGTCGATGGCAGCAATCCGATTGATGTCACTGATCCTGACTGGCATTTATATCT 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTTTTTGTCGATGGCAGCAACCCGATTGATGTCACTGATCCTGACTGGCATTTATATCT 718
Query 720 CTTAATCCAGAAGAAAGAGGAAAAAGAAGATCCTTTGTATCGAATTGTGGGCTTTACCGC 779
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 719 CTTAATCCAAAAGAAAGAGGAAAAAGAAGATCCTTTGTATCGAATTGTGGGATTTACTGC 778
Query 780 AATTTATAAGTTCTATCGTTATCCTGACAGGCTGCGGATGCGACTCAGCCAGATCTTGGT 839
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 779 AATTTATAAATTCTATCGTTATCCTGATAGGCTACGGATGCGACTCAGCCAGATCTTGGT 838
Query 840 CTTACCATCCTTCCAAGGAAAAGGACTCGGAAGCTATCTTATGGAGGTAGTAAACAACGT 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 CTTACCATCCTTCCAAGGAAAAAGACTCGGAAGCTATCTTATGGAGGTAGTAAACAACGT 898
Query 900 GGCCATAACAGAAAACGTTTACGATTTGACAGTTGAGGAGCCATCTGAAAAGTTCCAACA 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 899 GGCCATAACAGAAAACGTTTACGATTTGACAGTTGAAGAGCCATCTGAAAAGTTCCAACA 958
Query 960 CATCCGCACTTGCATAGACATAAACCGCTTGCGCAGTTTCGATCCAATCAAACCAGACAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATCCGCACTTGCATAGACATAAACCGCTTGCGCAGTTTCGATCCAATCAAACCAGACAT 1018
Query 1020 TGATTCAGCTGTTCAGACTCTCACAAAAGGAAAGCTATCAAAGAAAGCTCAGATACCTCG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGATTCAGCTGTTCAGACTCTCACAAAAGGAAAGCTATCAAAGAAAGCTCAGATACCTCG 1078
Query 1080 ATTCACCCCGCCTCTGAACGCCATTGAGAAAGTCCGCGAATCTCTGAAGATCAACAAGAA 1139
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATTCACCCCGCCTTTGAACTCCATTGAGAAAGTCCGCGAATCTCTGAAGATCAACAAGAA 1138
Query 1140 ACAGTTCCTCAAATGCTGGGAGATTTTGATATACCTTGCTCTTGATCCTATTGACAAGTA 1199
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1139 ACAGTTTCTCAAATGCTGGGAGATTTTGATATATCTTGCTCTTGATCCTATCGACAAGTA 1198
Query 1200 CATGGAAGATTACACATCAGTCATCACGAACCATGTGAGAACCGACATTCTGGGAAAAGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CATGGAAGATTACACATCAGTCATCACGAACCATGTGAGAACCGACATTCTGGGAAAAGA 1258
Query 1260 TATAGAAACTCCAAAGAAACAAGTCGTTGATGTTCCAAGCTCTTTCGAGCCAGAAGCATC 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1259 TATAGAAACTCCAAAGAAACAAGTCGTTGATGTTCCAAGCTCTTTTGAGCCCGAAGCATC 1318
Query 1320 GTTTGTGGTTTTCAAGTCTGTAAAC-GGAGAAGAGGCTAATACCAATGTTCAAGTTGATG 1378
|||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||
Sbjct 1319 GTTTGTGGTTTTCAAGTCTGCAAATAGG-GAAGAAGCTAATACCAATGTTCAAGTTGATG 1377
Query 1379 AAAACAAACCGGATCAAGAGCAGCAGCTGAAGCAACTTGTTGAGGAAAGGATTCGTGAGA 1438
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1378 AAAACAAACCGGATCAAGAGCAGCAGCTGAAGCAACTGGTTGAGGAAAGGATTCGTGAGA 1437
Query 1439 TCAAGTTGGTTGCTGAGAAAGTCTCCAAGAGTGGTC 1474
||||||||||||||||||||||||| |||||| |||
Sbjct 1438 TCAAGTTGGTTGCTGAGAAAGTCTCTAAGAGTTGTC 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63915431110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5