BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56750.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495766 jgi|Araly1|495766|fgenesh2_kg.8__1582__AT5G56750.1 2163 0.0
Ahg922054 jgi|Araly1|922054|scaffold_103335.1 143 4e-33
> Ahg495766 jgi|Araly1|495766|fgenesh2_kg.8__1582__AT5G56750.1
Length=1397
Score = 2163 bits (1171), Expect = 0.0
Identities = 1312/1378 (95%), Gaps = 17/1378 (1%)
Strand=Plus/Plus
Query 69 ACGGCGACGGTGACGGC-TAAGCGGAAGAGCTTTTGTTGCCAATGACGGACTCTTACGGC 127
||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 28 ACGACGACGGCGACGGCGGAAGCAGAAGAGCTTTTGTTGCCAATGACGGACTCTTACGGC 87
Query 128 GCCGTCTCCGTCGACGTTGGAACAATCTATCTTGGTGGCAAGGAGCATCGTGTTAAAACT 187
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 GCCGTTTCCGTCGACGTTGGAACAATCTATCTTGGTGGCAAGGAGCATCGTGTTAAAACT 147
Query 188 GCTAGTGGTGTTGTGTCTGTCATTGTCTATGGAGA-CAGAGAAAAGCCAGCATTGATTAC 246
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 148 GCTAGTGGTGTTGTGTCTGTCATTGTCTATGGAGATC-GGGAAAAGCCAGCATTGATTAC 206
Query 247 TTATCCTGATTTAGCCCTAAACCATATGTCATGCTTCCAAGGGTTATTCTTCTGTCCTGA 306
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 207 TTATCCTGATTTGGCCTTAAACCATATGTCATGCTTCCAAGGATTATTCTTCTGCCCTGA 266
Query 307 AGCAGCTTCATTGCTGCTTCATAACTTCTGCATTTACCATATCAGTCCACCTGGGCATGA 366
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 267 AGCAGCTTCATTGCTGCTACATAACTTCTGCATTTATCATATCAGTCCACCTGGGCATGA 326
Query 367 GTTAGGAGCTGCTCCAATTTGTCCTAATGATTCAGTCCCTTCTGCTGAAAACTTGGCAGA 426
||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 327 GTTAGGAGCTGCTCCGATTTGTCCTAATGACTCAGCCCCTTCTGCTGAAAACTTGGCAGA 386
Query 427 TCAGATCCTTGAAGTTCTCAACTTTTTCGGCCTTGGTGTTGTGATGTGTATGGGAGTGAC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TCAGATCCTTGAAGTTCTCAACTTTTTCGGCCTTGGTGTTGTGATGTGTATGGGAGTGAC 446
Query 487 TGCAGGTGCTTATATCCTCACCTTATTCGCGATGAAACATAGAGAACGGGTTCTTGGTTT 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 447 TGCAGGTGCTTATATCCTCACCTTATTCGCGATGAAACATAGAGAACGGGTTCTCGGTTT 506
Query 547 GATTCTTGTCTCACCGTTATGCAAGGCGCCGTCTTGGTCTGAATGGTTTTACAACAAGGT 606
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 507 GATTCTTGTCTCACCGTTATGCAAGGCCCCGTCTTGGTCTGAATGGTTTTACAACAAGGT 566
Query 607 TATCACAAACTTGTTATATTATTACGGAATGTGTGGAGTGGTAAAGGAATTTTTGCTTCA 666
|||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 567 TATCTCAAACTTGTTATATTACTATGGAATGTGTGGAGTGGTAAAGGAATTTTTGCTTCA 626
Query 667 GAGATATTTTAGTAAGGAAGTCCGTGGTAACGTTGAGATTCCAGAGTCAGATATAGCACA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GAGATATTTTAGTAAGGAAGTCCGTGGTAACGTTGAGATTCCAGAGTCAGATATAGCACA 686
Query 727 AGCTTGCAGAAGACTGCTTGATGAAAGACAAGGCATAAACGTTTTGCGATTTCTTGACGC 786
||| |||||||||||||||||||| || ||| || |||||||| |||| |||||||||||
Sbjct 687 AGCATGCAGAAGACTGCTTGATGAGAGGCAAAGCGTAAACGTTATGCGGTTTCTTGACGC 746
Query 787 CATTGACCGGAGACCTGACATCTCAAGTGGATTGAAGAAACTAAAATGCAGGACACTTAT 846
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 747 CATTGATCGGAGACCTGACATCTCAAGCGGATTGAAGAAACTAAAATGCAGGACACTTAT 806
Query 847 CTTCATCGGAGATCAATCTCCTTTCTACTCAGAAGCTGTTCACATGGCAGCAACTTTGGA 906
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 807 CTTCATCGGAGATCAATCTCCCTTCTACTCAGAAGCTGTTCACATGGCAGCAACTTTGGA 866
Query 907 TAGAGGATACTGTGCTTTGGTTGAGGTTCAGGCTTGTGGTTCAATGGTAACAGAGGAGCA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TAGAGGATACTGTGCTTTGGTTGAGGTTCAGGCTTGTGGTTCAATGGTAACAGAGGAGCA 926
Query 967 ACCACATGCAATGTTGATCCCAATGGAATATTTCTTGATGGGTTACGGATTATACAGACC 1026
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 927 ACCACATGCAATGTTGATCCCAATGGAATATTTCTTGATGGGTTACGGATTATATAGACC 986
Query 1027 ATCTCTTTTCTCCGAGAGCCCTAGAAGTCCACTTAGCCCTTCTTGTATTTCACCTGAGCT 1086
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 987 ATCTCTTTTCACAGAGAGCCCTAGAAGTCCTCTTAGCCCTTCTTGTATTTCACCTGAGCT 1046
Query 1087 TCTCTCTCCTGAAAGCATGGGATTAAAGCTTAAGCCTATCAAAACCAGAATTTCGGCGGC 1146
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1047 TCTCTCTCCTGAAAGCATGGGATTAAAGCTTAAGCCGATCAAAACCCGAATTTCGGCGGC 1106
Query 1147 TTAAGTGTGTGTGCAC-T-ACTGATTCATTGGTTCTAATTTTGCTGAGGAGAAGAAATCT 1204
||||| |||||||| | | |||||||||||||||||||||||||||||||||| | |||
Sbjct 1107 TTAAGAGTGTGTGCGCATTACTGATTCATTGGTTCTAATTTTGCTGAGGAGAA-A--TCT 1163
Query 1205 TAGGGCTTTTGTAGATATAGAACAAT-ACTAGGGAGATTTGagaagaagaagacgaagaa 1263
||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1164 TAGGGCTATTGTAGATATAGAACAATCACTAGGGAGATTTGAGAAGAAGAAGAAGAAGAG 1223
Query 1264 ga--a-AAATTCAAGCCA-CCATCATATAACACATTCTTTTGTAGTCAGCCGACACGACA 1319
|| | |||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 1224 GAGGAGAAATTCAAGCCATCCTT-ATATAACACATTCTTTTGTAGTCAGCCGACACGACA 1282
Query 1320 GTTCTCTTGTTAAGATGCCACAAAATGTTGTTTATTATTTCAtttttttATACATATGTA 1379
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1283 GTTCTCTTGTTAAGAAGCCACGAAATGTTGTTTATTATTTCATTTTTT-ATACAT--GTA 1339
Query 1380 AAATGTTCTGTTCTTGTGACATTGTAACAATTGTTTTGTGACGAACTCTGCAGAAGCA 1437
|||||||||||| |||||||||||||| |||||||| |||| |||||||||||| |||
Sbjct 1340 AAATGTTCTGTTGTTGTGACATTGTAATAATTGTTTGGTGATGAACTCTGCAGATGCA 1397
> Ahg922054 jgi|Araly1|922054|scaffold_103335.1
Length=298
Score = 143 bits (77), Expect = 4e-33
Identities = 95/104 (91%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 167 AAGGAGCATCGTGTTAAAACTGCTAGTGGTGTTGTGTCTGTCATTGTCTATGGAGACAGA 226
||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 66 AAGAAGCATCGTGTTATAACTGCTAGTGGTGTTGTGTCTGTCATTGTCTTTGGAGATAGA 125
Query 227 GAAAAGCCAGCATTGATTACTTATCCTGATTTAGCCCTAAACCA 270
||||||| | ||| |||||||||||||||||| ||| |||||||
Sbjct 126 GAAAAGCGACCATCGATTACTTATCCTGATTTGGCCTTAAACCA 169
Score = 137 bits (74), Expect = 2e-31
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 366 AGTTAGGAGCTGCTCCAATTTGTCCTAATGATTCAGTCCCTTCTGCTGAAAACTTGGCAG 425
|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 178 AGTTAGGAGCTGCTCCGATTTGTCCTAATGACTCAGCCCCTTGTGCTGAAAACTTGGCAG 237
Query 426 ATCAGATCCTTGAAGTTCTCAACTTTTTCG 455
|||||||||||||| |||||||||||||||
Sbjct 238 ATCAGATCCTTGAA-TTCTCAACTTTTTCG 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5