BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56760.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495767 jgi|Araly1|495767|fgenesh2_kg.8__1583__AT5G56760.1 1559 0.0
> Ahg495767 jgi|Araly1|495767|fgenesh2_kg.8__1583__AT5G56760.1
Length=1122
Score = 1559 bits (844), Expect = 0.0
Identities = 979/1043 (94%), Gaps = 14/1043 (1%)
Strand=Plus/Plus
Query 32 TTTATAGGTAGGAGGAGATAGAAATC-GAATCTTATCGCCG-CGTTAATATGCCACCGGC 89
|||||||||||| ||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 1 TTTATAGGTAGGGGGAGATAGAAATCGGAATCTTATCGCCGTCGTTAAGATGCCACCGGC 60
Query 90 CGGAGAACTCCGACATCAATCTCCATCAAAGGAGAAACTATCTTCCGTTACCCAATCCGA 149
||||||||||||||||||||||||||| ||||| |||| |||||||| ||| |||||| |
Sbjct 61 CGGAGAACTCCGACATCAATCTCCATCGAAGGATAAACAATCTTCCGATACTCAATCC-A 119
Query 150 -TGAAGCAGAAGCAGC-G--TCAGCAGCGATATCTGCGGCAGCTGCAGATGCGGAAGCTG 205
||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGAAGCAGCAGCAGCGGCAGCAGCAGCGATATCTGCGGCAGCTGCAGATGCGGAAGCTG 179
Query 206 CCGGATTATGGACACAGATCAAGGCGGAAGCTCGCCGTGATGCTGAGGCGGAGCCAGCTT 265
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 180 CCGGATTATGGACACAGATCAAAGCGGAAGCTCGCCGTGACGCTGAGGCGGAGCCGGCGT 239
Query 266 TAGCTAGCTATCTATATTCGACGATTCTTTCTCATTCGTCTCTTGAACGATCTATCTCGT 325
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TAGCTAGCTATCTCTATTCGACGATTCTTTCTCATTCGTCTCTTGAGCGATCTATCTCGT 299
Query 326 TTCATCTAGGAAACAAGCTTTGTTCCTCAACGCTTTTATCCACACTTTTATACGATCTGT 385
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TTCATTTAGGAAACAAGCTTTGTTCCTCGACGCTTTTATCCACACTTTTATACGATCTGT 359
Query 386 TCTTAAACACTTTTTCCTCCGATCCTTCTCTTCGTAACGCCACCGTCGCAGATCTACGCG 445
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 TCTTAAACACTTTTTCCTCCGATCCTTCTCTGCGTAACGCCACCGTCGCAGATCTACGCG 419
Query 446 CTGCTCGTGTTCGTGATCCTGCTTGTATCTCGTTCTCTCATTGTCTCCTCAATTACAAAG 505
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 CTGCTCGTGTTCGTGATCCTGCTTGTATCTCGTTCTCTCATTGCCTCCTCAATTACAAAG 479
Query 506 GCTTCTTAGCTATTCAGGCGCATCGTGTATCACACAAGCTATGGACACAATCACGGAAGC 565
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 480 GCTTCTTAGCTATTCAGGCGCATCGTGTTTCACACAAGCTATGGACGCAATCACGGAAGC 539
Query 566 CATTAGCATTAGCTCTACACTCAAGAATCTCCGATGTATTCGCTGTTGATATCCATCCAG 625
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 540 CATTAGCATTAGCTCTACACTCAAGAATCTCCGATGTATTCGCGGTGGATATTCATCCAG 599
Query 626 CAGCGAAGATCGGAAAAGGGATACTTCTAGACCACGCAACCGGAGTTGT-AGTCGGAGAA 684
| |||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||
Sbjct 600 CGGCGAAGATCGGAAAAGGGATACTTCTCGACCACGCAACCGGGGTTGTTA-TCGGAGAA 658
Query 685 ACAGCGGTGATTGGGAACAATGTTTCAATCCTTCACCATGTGACACTAGGTGGAACAGGT 744
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 659 ACAGCTGTGATTGGGAACAATGTTTCAATCCTTCACCATGTGACACTCGGTGGAACGGGT 718
Query 745 AAAGCTTGTGGAGATAGACATCCGAAGATCGGTGACGGTTGTTTGATTGGAGCTGGAGCG 804
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 719 AAAGCTTGTGGAGATAGACATCCGAAGATTGGTGATGGTTGTTTGATTGGAGCTGGAGCG 778
Query 805 ACTATTCTTGGAAATGTGAAGATTGGTGCAGGTGCTAAAGTAGGAGCTGGTTCTGTTGTG 864
|||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct 779 ACTATTCTTGGAAATGTGAAGATTGGAGCTGGAGCTAAAGTAGGTGCTGGTTCTGTTGTG 838
Query 865 CTGATTGACGTGCCTTGTCGAGGTACTGCGGTTGGGAATCCGGCGAGACTTGTCGGAGGG 924
||||| |||||||||||||||| ||| ||||||||||||||||||||||| || |||||
Sbjct 839 CTGATCGACGTGCCTTGTCGAGCTACGGCGGTTGGGAATCCGGCGAGACTCGTTGGAGGA 898
Query 925 AAAGAGAAGCCAACGATTCATGATGAGGAATGTCCTGGAGAATCGATGGATCATACTTCA 984
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 AAAGAGAAACCAACTATTCATGATGAGGAATGTCCCGGAGAATCGATGGATCATACTTCA 958
Query 985 TTCATCTCGGAATGGTCAGATTACATCATATAAAGTTGTTGTTAT-A--ATTGTTTCTGT 1041
||||||||||||||||||||||||||||||||||||| || | || | |||||||||||
Sbjct 959 TTCATCTCGGAATGGTCAGATTACATCATATAAAGTTATTATCATTATCATTGTTTCTGT 1018
Query 1042 GGT-TTTGAAAGTGAAAAACTTT 1063
| | |||||||||||||| ||||
Sbjct 1019 G-TCTTTGAAAGTGAAAACCTTT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5